RetrogeneDB ID: | retro_ogar_3408 | ||
Retrocopy location | Organism: | Bushbaby (Otolemur garnettii) | |
| Coordinates: | GL873820.1:660536..661421(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | VPS26B | ||
| Ensembl ID: | ENSOGAG00000015370 | ||
| Aliases: | None | ||
| Description: | vacuolar protein sorting 26 homolog B (S. pombe) [Source:HGNC Symbol;Acc:28119] |
Retrocopy-Parental alignment summary:
>retro_ogar_3408
AGTTTTCTTGGAGGCTTTTTCGGTCCAATTTGCGAGATTGATATTGTCCTTCATGATGGAGAAACCAGGAAAATGGCAGA
AATGAAAACTGAAGATGGCAAAGTGGAAAAACACTGTGTCTTCTAGGATGGAGAATCTGTTCAGGGAAGGTAAACGTAGC
CTTTTAGCAACCTGGAAAGAAGCTAGAGCACCAGGGAATTAGAATTGAATTTGTAGGTCAAATTGAACTTTTCAATGACA
AGAGTAATACTCATGAATTTGTAAACCTAGTGAAAGAACCAGCCCTACCTGGAGAACTGACTCAGAGCACAAGTTAGGAT
TTTGCATTTATGCAAGTTGAAAAGCCATCAGAATCTTACATGGGTGCCAATGTCTGCTTGAGGTATTTTCTTAAAGTGAC
AATAGTAAGAAGACTGACAGATTTGGTAAAAGAATATGATCTTATTATTCACCAGCTTGCCACCTATTCAGATGTTAAAT
TCTATCAAGATGGAAGTGGGCATTGAAGATTGTCCACATAGAGAATTTGAATATAATAAATCAAAGTATCATTTAAAGGA
TGTGATTGTTAGAAAAATTTACTTTTTATTAGTAAGAATAAAAATATAACATATGGAGTTACAACTGATCAAAATAGAGA
TAACAGGAATTGGACCCAGTACCACAATGGAAACAGAAACAATTGCCAAATGTGAAATAAAGGATGGTGCACCAGTGAAA
GGGGAATCAATTCCAGTAAGACTATTTTTAGCAGGGTATGACCCAATTCCAACAAGGAGAGATGTGAACAAAAAGTTTTC
AGTAAGATACTTTTTGAATTTAGTGCTTGTTGATGAGGAAGACAGAAGGTACTTCAAGCAGCAGGAGATCGTTTTATGGA
GAAAA
ORF - retro_ogar_3408 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 68.46 % |
| Parental protein coverage: | 87.76 % |
| Number of stop codons detected: | 4 |
| Number of frameshifts detected: | 2 |
Retrocopy - Parental Gene Alignment:
| Parental | SFFG--FGQSVEVEILLNDAESRKRAEHKTEDGKKEKYFLFYDGETV-SGKVSLALKNPNKRLEHQGIKI |
| SF.G..FG...E..I.L.D.E.RK.AE.KTEDGK.EK...F.DGE.V.SGKV..A...P.K.LEHQGI.I | |
| Retrocopy | SFLGGFFGPICEIDIVLHDGETRKMAEMKTEDGKVEKHCVF*DGESV<SGKVNVAF*QPGKKLEHQGIRI |
| Parental | EFIGQIELYYDRGNHHEFVSLVKDLARPGEITQSQAFDFEFTHVEKPYESYTGQNVKLRYFLRATISRRL |
| EF.GQIEL..D..N.HEFV.LVK..A.PGE.TQS...DF.F..VEKP.ESY.G.NV.LRYFL..TI.RRL | |
| Retrocopy | EFVGQIELFNDKSNTHEFVNLVKEPALPGELTQSTS*DFAFMQVEKPSESYMGANVCLRYFLKVTIVRRL |
| Parental | NDVVKEMDIVVHTLSTYPE-LNSSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIKHMEI |
| .D.VKE.D...H.L.TY...LNS.IKMEVGIEDC.H.EFEYNKSKYHLKDVIV.KIYFLLVRIKI.HME. | |
| Retrocopy | TDLVKEYDLIIHQLATYSD>LNS-IKMEVGIEDCPHREFEYNKSKYHLKDVIVRKIYFLLVRIKI*HMEL |
| Parental | DIIKRETTGTGPNVYHENDTIAKYEIMDGAPVRGESIPIRLFLAGYELTPTMRDINKKFSVRYYLNLVLI |
| ..IK.E.TG.GP....E..TIAK.EI.DGAPV.GESIP.RLFLAGY...PT.RD.NKKFSVRY.LNLVL. | |
| Retrocopy | QLIKIEITGIGPSTTMETETIAKCEIKDGAPVKGESIPVRLFLAGYDPIPTRRDVNKKFSVRYFLNLVLV |
| Parental | DEEERRYFKQQEVVLWRK |
| DEE.RRYFKQQE.VLWRK | |
| Retrocopy | DEEDRRYFKQQEIVLWRK |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_3408 was not experimentally validated.
Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Otolemur garnettii | ENSOGAG00000015370 | 2 retrocopies |
retro_ogar_3407, retro_ogar_3408 ,
|