RetrogeneDB ID: retro_ogar_491

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873522.1:36754260..36755337(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: METTL16
• Ensembl ID: ENSOGAG00000004504
• Aliases: None
• Description: methyltransferase like 16 [Source:HGNC Symbol;Acc:28484]

Sequence

>retro_ogar_491
AACTCCTTGAAGACTCCAACTAGTTCTGTAAATACAGGAGGTATCACAGAGATCATAGCAGAAGGAGGTGAATAGGAGTT
TGTTAAAAAGATCATTCATGACAGTTTACAACTTAAATAAAGATCAAGATTGTATAGCAGCATACTAGGAAAGCAACACA
GCCTGGCCCCTCTGAAGGAAGAGCTATATAGACAAGCACTTTCTAAAGTCACCTACACTGAATTCTATCAATGTTGGACA
ATGAGGTGGGCTAAGGCTTGGAGTTTTTATGATGATGTAACAGTACTATCACCAACAAGTAAGCAAAGAAAATTAGAGAA
GCCAAGGAAACCCATTATGTATGTGTGTTTATCTGTGATGAAAGAATTATTCCTCAAAGCATCATCTTTGGGTAAAACAG
TGGAATGCATAGTAGTTATCACCATGGGATGGAAAACATTCTCACTGAGTGATGGTCCATCATAAATGAGTTTCCTGTGG
AAAAGTGGAACTTAGCCTTTTTCTAACACTTGTAGAAAACTCTCACGTTCATTTGAGAAAGAGAAGAGAGCTAGTGAGAC
AATTAGGAGAAGTTCCTAGAGCTTTGAGGATGTCATCCAAACGTTGGAAGAAGAAAAAGTCCACCCCCAAAGAGTCTGGC
AACAGCCAAGAATTGGTCAAGGATCCCTGGGGAAGTGCCCTGTGTGGGCCTGCACCTGGGGTAGATGAGACTGCCACCGT
TGAGGGCCATTGTCCATGCCAGGAGTCACTCTGCCAGGAGAACAATCCATGGAGGAAAACCCAGAACCCACAGAGGACAA
AAGGAGTCAGGAAAAGGGTGGGATGGAGGTTTTGTAAAGGTTTAGCAATGGAGCCCAGGACCAAGGGGTTTCTGAGCAGA
TCAGCAACCTAGCAGCTGAAAAGAGGAAATATCTCCAAAGAGTGGCTGAACATTGCCTGTTTAAGTGTTTGATCAATATT
AAAAAGGAGGGGGATGATGCCTTAGTTGAAATGCATTGGGTCAAGGGCCAGAACAGGGATGTGATGAACCAACTTTGCAC
CTACATACATAACCAGATTTTCAGGCTTGTGGCTAGT

Alignment

ORF - retro_ogar_491 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 70.46 %
• Parental protein coverage: 64.35 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 5

Retrocopy - Parental Gene Alignment:

Parental  NPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLKEELRIQGVPKV
          N....P.SSVNTGGITEI.AEGGE.EFVK.IIHDSLQLK.R.R.YS..LGK..SLAPLKEEL..Q...KV
Retrocopy NSLKTPTSSVNTGGITEIIAEGGE*EFVKKIIHDSLQLK*RSRLYSSILGKQHSLAPLKEELYRQALSKV

Parental  TYTEFCQGRTMRWALAWSFYDDVTVPSPPSKRRKLEKPRKPITFVVLASVMKELSLKASSLGSETVEGIV
          TYTEF.Q..TMRWA.AWSFYDDVTV.SP.SK.RKLEKPRKPI..V.L.SVMKEL.LKASSLG..TVE.IV
Retrocopy TYTEFYQCWTMRWAKAWSFYDDVTVLSPTSKQRKLEKPRKPIMYVCL-SVMKELFLKASSLG-KTVECIV

Parental  VVTTW-IEKILTD-LKVQHKRVPCGKEELSLFLTAIENSWIHLRRKRRERVRQLREVPRAP-EDVIQALE
          V.T....E.ILT....V.HK.V.CGK.ELSLFLT..ENS..HLR.KRRE.VRQL.EVPRA..EDVIQ.LE
Retrocopy VITMG<MENILTE<VMVHHK*VSCGKVELSLFLTLVENSHVHLR-KRRELVRQLGEVPRAL<EDVIQTLE

Parental  E-KKSTPKESGNSQELVKDSQESILCGPAPGEGEPATVEGHCPHQESFCQEENAEPMEDERSEEKGGMEV
          E.KKSTPKESGNSQELVKD...S.LCGPAPG..E.ATVEGHCP.QES.CQ.EN.............G...
Retrocopy E>KKSTPKESGNSQELVKDPWGSALCGPAPGVDETATVEGHCPCQESLCQ-ENNPWRKTQNPQRTKGVRK

Parental  LEG---CKGS-SNGAQDQEVSEQFSNSAAERGKDLQGVAGQYLFKCLINVKKEVDDTLVEMHWVEGQNRD
          ..G...CKG..SNGAQDQ.VSEQ.SN.AAE..K.LQ.VA...LFKCLIN.KKE.DD.LVEMHWV.GQNRD
Retrocopy RVGWRFCKGL<SNGAQDQGVSEQISNLAAEKRKYLQRVAEHCLFKCLINIKKEGDDALVEMHWVKGQNRD

Parental  LMNQLCTYIRNQIFRLVAS
          .MNQLCTYI.NQIFRLVAS
Retrocopy VMNQLCTYIHNQIFRLVAS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_491 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000017440	2 retrocopies	retro_btau_1159, retro_btau_1533,
Myotis lucifugus	ENSMLUG00000003531	2 retrocopies	retro_mluc_1130, retro_mluc_1625,
Monodelphis domestica	ENSMODG00000010765	2 retrocopies	retro_mdom_305, retro_mdom_339,
Otolemur garnettii	ENSOGAG00000004504	1 retrocopy	retro_ogar_491 ,
Ictidomys tridecemlineatus	ENSSTOG00000011876	1 retrocopy	retro_itri_1568,