>retro_ogar_623
ATGTTTTATATCAACAACGATGTGAAACTGGACTTCAGGGATGTCTTGTTGAGGCCCAAATGCAACACCCTTAAGTCTTG
AAGTGAGGTGTATCTCACAAGATCCTTTACATTTCATAATTCAAAGCAGATATACACTGGGATCCCCATCATTGCCTCCA
ATATGGATACTGTGGGCACCTTTGAGATGGCCAAGGCTCTCTGTAAGTTCCCCCTCTTCACTGCTGTCCATAAGCACTAC
AACCTCGATCAGTGGCAAGAGTTTGCTAGACAAAATCCTGACTGTCTTGAGCATCTGGCTGCCAGCTCAGGCACAGGCTC
TTTTGACTTTGAGCATCTGGAACAGATCTTGGAAACTATTCCCCAAGTGAACTATCTATGCCTGGATGTGGCAAACGGCT
ATTCTGAACACTGTGTTGAATTTGTGAAGGATTTGCGGAAGTGTTTCCCCCAACACACCATAATGGCCGAGAATGTGGTA
ACAGGAGAAATGGTGGAAGAGCTAATTCTCTCTGGGGCTGACATCATCAAAGTGGGAATTGGGTCAGGCTCTGTGTGTAC
CACTCGCAAGAAGACTGGAGTGAGGTATCCACAGCTCAGTGCAGTGATGGAGTGTGGGGATGCTGCTCATGGCCTTAATG
GTCACATCATTTCAGATGGAGGCTACAGCTGTCCTGGGGATATGGCCAAGGCTTGGGGGGCAGGGGCTGATTTCGTGATG
CTGGCTGGGCACAGTGAGTCAGGTGGTGAGCTCACTGAGAAGAATGGCAAAAAGTACAAACTCTTTTATGGAATGAGTTC
TGAAATGGCCATGAAGAAGTATTATTGAAGCATGGCTGAGTACAGGGCCTCAGAGGGAAAGGCAGTGGTGGAAATTCCCT
TTAAAGGGGATGTGGAACATACCGTCCAAGACATTCTAGAAGGGATTCGCTATACGTGTACTTATGTGGGAGTAGCTCAG
CTGAAGGAGTTGAGCCACAGAACTACCTTTAATCCAAGTCACCCAGAAGCTGAATCCAATGTTCAGTGATGAGCAC
ORF - retro_ogar_623 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
87.22 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | MSHIDNDVKLDFKDVLLRPKRNTLKSRSEVDLTRSFTFRNSKQMYTGIPIIASNMDTVGTFEMAKVLCKF |
| M..I.NDVKLDF.DVLLRPK.NTLKS.SEV.LTRSFTF.NSKQ.YTGIPIIASNMDTVGTFEMAK.LCKF |
Retrocopy | MFYINNDVKLDFRDVLLRPKCNTLKS*SEVYLTRSFTFHNSKQIYTGIPIIASNMDTVGTFEMAKALCKF |
|
Parental | SLFTAVHKHYSLDQWQEFARQNPDCLEHLAASSGTGSFDFERLEQILEAIPQVNYICLDVANGYSEHFVE |
| .LFTAVHKHY.LDQWQEFARQNPDCLEHLAASSGTGSFDFE.LEQILE.IPQVNY.CLDVANGYSEH.VE |
Retrocopy | PLFTAVHKHYNLDQWQEFARQNPDCLEHLAASSGTGSFDFEHLEQILETIPQVNYLCLDVANGYSEHCVE |
|
Parental | FVKDLRTRFPEHTIMAGNVVTGEMVEELILSGADIVKVGIGSGSVCTTRKKTGVGYPQLSAVMECADAAH |
| FVKDLR..FP.HTIMA.NVVTGEMVEELILSGADI.KVGIGSGSVCTTRKKTGV.YPQLSAVMEC.DAAH |
Retrocopy | FVKDLRKCFPQHTIMAENVVTGEMVEELILSGADIIKVGIGSGSVCTTRKKTGVRYPQLSAVMECGDAAH |
|
Parental | GLNGHIISDGGCSCPGDVAKAFGAGADFVMLGGMLAGHSESGGELTEKNGKKYKLFYGMSSEMAMKKYYQ |
| GLNGHIISDGG.SCPGD.AKA.GAGADFVML.G....HSESGGELTEKNGKKYKLFYGMSSEMAMKKYY. |
Retrocopy | GLNGHIISDGGYSCPGDMAKAWGAGADFVMLAG----HSESGGELTEKNGKKYKLFYGMSSEMAMKKYY* |
|
Parental | SMAEYSLRASEGK-TVEIPFKGDVEHTIRDILGGIRSTCTYVGAAQLKELSRRTTF-IRVTQQLNPMFSD |
| SMAEY..RASEGK..VEIPFKGDVEHT..DIL.GIR.TCTYVG.AQLKELS.RTTF.I.VTQ.LNPMFSD |
Retrocopy | SMAEY--RASEGKAVVEIPFKGDVEHTVQDILEGIRYTCTYVGVAQLKELSHRTTF>IQVTQKLNPMFSD |
|
Parental | EH |
| EH |
Retrocopy | EH |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_623 was not experimentally validated.
Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.