RetrogeneDB ID: retro_ogar_770

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873527.1:39733389..39734117(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: JAZF1
• Ensembl ID: ENSOGAG00000029759
• Aliases: None
• Description: JAZF zinc finger 1 [Source:HGNC Symbol;Acc:28917]

Sequence

>retro_ogar_770
ATGACAGGCATTGCAGCTACCTCCTTTTTCTCCAATACCTGCTGATTCCGGGGGTTGCAGAGTCCACTTCCCCACCCTGG
TCAACCTCCTTGAACACATCGAGGACAACCACATTGATAGAGATCCATGTGTTTTAGAAAAACAAGAGTTACAGCAGCCA
ACCTATGTTGCCCTGAGTTACATTAATAGATTCAGGACAGATGGTGTCCATCGAGAGCAGGAGTCCCTAAAGAAGAAAAT
TCAGCCAAAGCTCTCGATGACCCTGTCCAGCTCAGTGTCTTGAGGGAATGTGTCCACTCCACCACGCCACAGCAGAGGAA
GCCTTACTCCTCCTGGGGCCCCACCCATCCCGCCTCCTCTTCATTCCGCAGCAGCACTCCAACAGGCAGCGAGTATGAGG
AGGAGGAGGTGGGCTATGAGGAGTCCGGCGGTCATGAGTCCTGGACCACAGAGAACACGGTCAGCTCGAAGCCAGCCTCA
GCTCCGTGTGCATGAATGTAGAGGAAGAGAAGCCATTTGCCTGACCGGTTCCTGGATGTAGAAAGAGATACAAGAATGTG
AATGGCATAAAGTACCACGCTAAGAATGGCCACAGAACACAGATTCGTGTCCGCAAACCATTCAAATGCCGAAGTGGGAT
GAGTTACAAGACAGCCCCGGGCCTGTGGCACCACAAAATCAATTTCCATCCCCCGGTTTCGGCTGAGATTATCGGGACGG
TACAGCAA

Alignment

ORF - retro_ogar_770 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 82.11 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 3
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  MTGIAAASFFSNTCRF-GGCGLHFPTLADLIEHIEDNHIDTDPRVLEKQELQQPTYVALSYINRFMTDAA
          MTGIAA.SFFSNTC.F.GGC..HFPTL..L.EHIEDNHID.DP.VLEKQELQQPTYVALSYINRF.TD..
Retrocopy MTGIAATSFFSNTC*F>GGCRVHFPTLVNLLEHIEDNHIDRDPCVLEKQELQQPTYVALSYINRFRTDGV

Parental  RREQESLKKKIQPKLSLTLSSSVSRGNVSTPPRHSSGSLTPPVTPPITP-SSSFRSSTPTGSEYDEEEVD
          .REQESLKKKIQPKLS.TLSSSVS.GNVSTPPRHS.GSLTPP..PPI.P.SSSFRSSTPTGSEY.EEEV.
Retrocopy HREQESLKKKIQPKLSMTLSSSVS*GNVSTPPRHSRGSLTPPGAPPIPP<SSSFRSSTPTGSEYEEEEVG

Parental  YEESDSDESWTTESAISS-EAILSSMCMNGGEEKPFACPVPGCKKRYKNVNGIKYHAKNGHRTQIRVRKP
          YEES...ESWTTE...SS.EA.LSS.CMN..EEKPFA.PVPGC.KRYKNVNGIKYHAKNGHRTQIRVRKP
Retrocopy YEESGGHESWTTENTVSS<EASLSSVCMNVEEEKPFA*PVPGCRKRYKNVNGIKYHAKNGHRTQIRVRKP

Parental  FKCRCGKSYKTAQGLRHHTINFHPPVSAEIIRKMQQ
          FKCR.G.SYKTA.GL.HH.INFHPPVSAEII...QQ
Retrocopy FKCRSGMSYKTAPGLWHHKINFHPPVSAEIIGTVQQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_770 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000003001	1 retrocopy	retro_cfam_1761,
Felis catus	ENSFCAG00000023035	1 retrocopy	retro_fcat_1660,
Otolemur garnettii	ENSOGAG00000029759	1 retrocopy	retro_ogar_770 ,