RetrogeneDB - Retrocopy retro_ogar

                        
>retro_ogar_820
ATGTCGGGACCCGTGCCAAGCAGGGCCAGAGTTTACACAGACGTTAATACGCATAGACCCCGAGAATACTGGGATTATGA

GTCACATGTGGTGGAATGGGGAAATCAAGATGACTACCAGCTTGTTGGAAAATTAGGACGGGGTAAATACAGTGAAGTAT

TTGAAGCTGTCAGCGTCACAAATAATGAAAACATTGTTATTAAAGTTCTGAAGCCAGTAAAGAAGAAGAAAATTAAGCGT

GAAATAAAGATTTTGGAGAATTTGAGAGGAGGTCCCAATATCATCACATTGGTAGACATCGTAAAAGACCCTGTGTCACG

AACCCCTGCCTTGGTTTTTGAACTCGTACACAACACAGACTTCAAGCAGTTGTACCAGATGTTAACAGACTATGATATTC

GATTTTACATGTATGAGATTTTGAAGGCCCTGGATTATTGTCACAGCATGGGAATAATGCACAGAGATGTGAAGCCGCAT

AATGTCATGATTGATCATGAACAAAGAAAGGTACGGCTCATAGACTGGGGTTTGGCTGAGTTCTATCATCCTGGCCAAGA

ATATAATGTCCGAGTTGCTTCCCGATACTTTAAAGGTCCTGAGCTACTTGTAGACTATCAGATGTATGATTACAGTTTGG

ATTTGTGGAGCTTGGGGTGTATGCTGGCAAGTATGATCTTTCGGAAGGAGCCATTTTTCCACGGTCATGACAATTATGAT

CAGTTGGTGAGGATAGCCAAGGTTCTGGGGACGGAAGATTTATATGACTATATTGACAAATACAACATTGACTTAGATCC

ACGTTTCAGTAATCTCTTAGGCAGACATTCTCGTAAGCGATGGGAGCGCTTCGTCCACAGTGAAAACCAGCACCTTGTGA

GCCCTGAGGCCTTGGATTTCCTGGACAAGCTGCTGCGATATGACCACCAGTCACGGCTTACCGCAAGAGAGGCCATGGAG

CATCCTTATTTCTATACTATTGTGAAGGATCAGGCTCGAATGGGTTCAACTAGCATGCCAGGAGGCAGTATGTTTGTAAG

CAGCACCAACAAGAAGTCAGGGATTTCTTCGGTGCCTACTCCTTCACCTCTTAAACCTCTGGCAGGCGCGCCAGTGATTG

CTTCTGCCAACCCCCTTGGGATGCCTGTTGCAGCTGCCGCTGGCGCTCAACAG

ORF - retro_ogar_820 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

Percent Identity:	92.07 %
Parental protein coverage:	100.0 %
Number of stop codons detected:	0
Number of frameshifts detected:	0

Retrocopy - Parental Gene Alignment:

                                ParentalMSGPVPSRARVYTDVNTHRPREYWDYESHVVEWGNQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKIL
MSGPVPSRARVYTDVNTHRPREYWDYESHVVEWGNQDDYQLV.KLGRGKYSEVFEA...TNNE..V.K.L
RetrocopyMSGPVPSRARVYTDVNTHRPREYWDYESHVVEWGNQDDYQLVGKLGRGKYSEVFEAVSVTNNENIVIKVL
ParentalKPVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQTLTDYDIRFYMYEI
KPVKKKKIKREIKILENLRGGPNIITL.DIVKDPVSRTPALVFE.V.NTDFKQLYQ.LTDYDIRFYMYEI
RetrocopyKPVKKKKIKREIKILENLRGGPNIITLVDIVKDPVSRTPALVFELVHNTDFKQLYQMLTDYDIRFYMYEI
ParentalLKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYD
LKALDYCHSMGIMHRDVKPHNVMIDHE.RK.RLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYD
RetrocopyLKALDYCHSMGIMHRDVKPHNVMIDHEQRKVRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYD
ParentalYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKR
YSLD.WSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNI.LDPRF...LGRHSRKR
RetrocopyYSLDLWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIDLDPRFSNLLGRHSRKR
ParentalWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTVVKDQARMGSSSMAGASTPVSSAN
WERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYT.VKDQARMGS.SM.G.S..VSS.N
RetrocopyWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTIVKDQARMGSTSMPGGSMFVSSTN
ParentalMMSGISSVPTPSPLGPLAGSPVIASANPLGMPVPAAAGAQQ
..SGISSVPTPSPL.PLAG.PVIASANPLGMPV.AAAGAQQ
RetrocopyKKSGISSVPTPSPLKPLAGAPVIASANPLGMPVAAAAGAQQ

                            

                            Legend:
                            
                                *Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide

                        

RNA-Seq - click to see more details

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Otolemur garnettii was not studied using ChIP-Seq data.

EST - click to see more details

Otolemur garnettii was not studied using EST data.

TSS - click to see more details

Otolemur garnettii was not studied using FANTOM5 data.

Lab - click to see more details

retro_ogar_820 was not experimentally validated.

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:

Parental genes homology involve 4 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000006946	1 retrocopy	retro_cfam_1408,
Homo sapiens	ENSG00000101266	1 retrocopy	retro_hsap_53,
Mus musculus	ENSMUSG00000074698	3 retrocopies	retro_mmus_1177, retro_mmus_2364, retro_mmus_377,
Otolemur garnettii	ENSOGAG00000002709	1 retrocopy	retro_ogar_820 ,

	RetrogeneDB ID:	retro_ogar_820
Retrocopy location	Organism:	*Bushbaby (Otolemur garnettii)*
	Coordinates:	GL873528.1:1856626..1857799(-)
	Located in intron of:	None
Retrocopy information	Ensembl ID:	ENSOGAG00000027915
	Aliases:	None
	Status:	KNOWN_PSEUDOGENE
Parental gene information	Parental gene summary:
	Parental gene symbol:	CSNK2A1
	Ensembl ID:	ENSOGAG00000002709
	Aliases:	None
	Description:	casein kinase 2, alpha 1 polypeptide [Source:HGNC Symbol;Acc:2457]

Parental	MSGPVPSRARVYTDVNTHRPREYWDYESHVVEWGNQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKIL
	MSGPVPSRARVYTDVNTHRPREYWDYESHVVEWGNQDDYQLV.KLGRGKYSEVFEA...TNNE..V.K.L
Retrocopy	MSGPVPSRARVYTDVNTHRPREYWDYESHVVEWGNQDDYQLVGKLGRGKYSEVFEAVSVTNNENIVIKVL

Parental	KPVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQTLTDYDIRFYMYEI
	KPVKKKKIKREIKILENLRGGPNIITL.DIVKDPVSRTPALVFE.V.NTDFKQLYQ.LTDYDIRFYMYEI
Retrocopy	KPVKKKKIKREIKILENLRGGPNIITLVDIVKDPVSRTPALVFELVHNTDFKQLYQMLTDYDIRFYMYEI

Parental	LKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYD
	LKALDYCHSMGIMHRDVKPHNVMIDHE.RK.RLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYD
Retrocopy	LKALDYCHSMGIMHRDVKPHNVMIDHEQRKVRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYD

Parental	YSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKR
	YSLD.WSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNI.LDPRF...LGRHSRKR
Retrocopy	YSLDLWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIDLDPRFSNLLGRHSRKR

Parental	WERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTVVKDQARMGSSSMAGASTPVSSAN
	WERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYT.VKDQARMGS.SM.G.S..VSS.N
Retrocopy	WERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTIVKDQARMGSTSMPGGSMFVSSTN

Parental	MMSGISSVPTPSPLGPLAGSPVIASANPLGMPVPAAAGAQQ
	..SGISSVPTPSPL.PLAG.PVIASANPLGMPV.AAAGAQQ
Retrocopy	KKSGISSVPTPSPLKPLAGAPVIASANPLGMPVAAAAGAQQ

*	Stop codon
>	Forward frameshift by one nucleotide
<	Reverse frameshift by one nucleotide

RetrogeneDB ID:

retro_ogar_820