RetrogeneDB ID: | retro_oind_26 | ||
Retrocopylocation | Organism: | Rice subsp. indica (Oryza sativa indica) | |
Coordinates: | 1:28943295..28943760(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | BGIOSGA004088 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | BGIOSGA036765 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 90.79 % |
Parental protein coverage: | 99.35 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV |
MQIFVKTLTGKTITLEVESSDTI.NVKAK.QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV | |
Retrocopy | MQIFVKTLTGKTITLEVESSDTIQNVKAKVQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV |
Parental | LRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGG |
LRLRGG...KV.TLTGKEI.IDIE.TDT.DRIKERVEE.EGIPPVQQRLIY.GKQLADDKTA.DY.IE.G | |
Retrocopy | LRLRGGLNVKVRTLTGKEIDIDIEMTDTVDRIKERVEEREGIPPVQQRLIYGGKQLADDKTAHDYKIEAG |
Parental | SVLHLVLALRGG |
SVLHLVLALRGG | |
Retrocopy | SVLHLVLALRGG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Oryza sativa indica | BGIOSGA036765 | 1 retrocopy |
retro_oind_26 ,
|
Musa acuminata | GSMUA_Achr3G30150_001 | 1 retrocopy | |
Oryza glaberrima | ORGLA06G0191700 | 1 retrocopy |