RetrogeneDB ID: | retro_macu_90 | ||
Retrocopylocation | Organism: | Wild banana (Musa acuminata) | |
Coordinates: | 9:33548967..33549402(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | GSMUA_Achr3G30150_001 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 80. % |
Parental protein coverage: | 92.36 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM |
LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM | |
Retrocopy | LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM |
Parental | MIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKEYNIEGGSVLHLVL |
.I.VKTLTGK.I....E..DTID..K.....KEGIPP.QQRLI.AGKQL.D..T...YNI...S.LHLVL | |
Retrocopy | QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL |
Parental | ALRGG |
.LRGG | |
Retrocopy | RLRGG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Oryza sativa indica | BGIOSGA036765 | 1 retrocopy | |
Musa acuminata | GSMUA_Achr3G30150_001 | 1 retrocopy |
retro_macu_90 ,
|
Oryza glaberrima | ORGLA06G0191700 | 1 retrocopy | |
Oryza sativa japonica | OS06G0650100 | 1 retrocopy | |
Triticum aestivum | Traes_5BL_8FFD203BD | 4 retrocopies |