>retro_olon_23
ATGAGAGGAGCTGTGGCCATCTTCAATGAGTTTAAGCGCCGTGGTTTGAACATTTCCATTACAGGGATCCCGAAAACTGT
GGACAATGATATCGGCATCATAGACAGGTCATTTGGGTTCCAAACCGCAGTGGAGATTGCTCAGCAGGCAATCGATGCAG
CACATGTCGAGGCTGTGAGTGCCGTGAATGGCATTGGACTTGTCAAACTTATGGGCAGGAGCACAGGCCACATTGCTCTT
CATGCCACCCTGAGCAGCCGCGATGTTGACTGCTGTTTGATTCCTGAGGTTGATTTCTATCTTGAAGGAAAGGGAGGCCT
GTTTGAGTTCTTGTATGAAAGGATAAAACAGAAGGGACATGCTGTTGTCGTTGTTGCTGAAGGTGCTGGTCAGGAATTGA
TTCCAAGGACTGACGATCAAAAGCGGGAGCAGGACGAGTCCGGCAACATTGTGTTCCTTGATGTGGGTCCCTGGTTAAAA
TCTGAGCTGGGTAAATGGTGGAAGAGAGAACACCCAAGCGAGTTGTTCACTGTGAAGTATATCGATCCCACTTACATGAT
ACGAGCTGTTCCAGCAAATGCCACTGACAATCTGTACTGTACATTGTTGGCACATTCGGCGATCCATGGGATCATGGCTG
GGTACACTGGCTTCGTCCCTGGCCCGATTAATGGAAACTATAGCTACATACCGCTGGAAGATGTTGCTGTGGCGAAGAAC
CCGGTGGATGTGAATGATCACAAATGGGCATGGGTTAGATCAGTCACAAACCAACCAGATTTCCTGAAGCCAAAATACTG
A
ORF - retro_olon_23 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
60.23 % |
Parental protein coverage: |
54.49 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | RGAGVIFEEIRRRGLKVAVAGIPKTIDNDIPVIDRSFGFDTAVEEAQRAINAAHVEAGSAENGIGLVKLM |
| RGA..IF.E..RRGL.....GIPKT.DNDI..IDRSFGF.TAVE.AQ.AI.AAHVEA.SA.NGIGLVKLM |
Retrocopy | RGAVAIFNEFKRRGLNISITGIPKTVDNDIGIIDRSFGFQTAVEIAQQAIDAAHVEAVSAVNGIGLVKLM |
|
Parental | GRHSGFIAHYATLASRDVDCCLIPESPFYLEGEGGLFRYLEKRLKENGHMVIVVAEGAGQKLINET-KES |
| GR..G.IA..ATL.SRDVDCCLIPE..FYLEG.GGLF..L..R.K..GH.V.VVAEGAGQ.LI..T.... |
Retrocopy | GRSTGHIALHATLSSRDVDCCLIPEVDFYLEGKGGLFEFLYERIKQKGHAVVVVAEGAGQELIPRTDDQK |
|
Parental | MGKDASGNSILLDVGLWLSQKIKEHFKKIKTT--INLKYIDPTYMIRAIPSNASDNVYCTLLAHSVVHGA |
| ...D.SGN...LDVG.WL........K..........KYIDPTYMIRA.P.NA.DN.YCTLLAHS..HG. |
Retrocopy | REQDESGNIVFLDVGPWLKSELGKWWKREHPSELFTVKYIDPTYMIRAVPANATDNLYCTLLAHSAIHGI |
|
Parental | MAGYTGFTVGQVNGRHCYIPFYRITEKQNKVSITDRMWARLLSSTNQPSFLSKK |
| MAGYTGF..G..NG...YIP........N.V...D..WA...S.TNQP.FL..K |
Retrocopy | MAGYTGFVPGPINGNYSYIPLEDVAVAKNPVDVNDHKWAWVRSVTNQPDFLKPK |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Oryza longistaminata was not studied using RNA-Seq expression data.
Oryza longistaminata was not studied using ChIP-Seq data.
Oryza longistaminata was not studied using EST data.
Oryza longistaminata was not studied using FANTOM5 data.
retro_olon_23 was not experimentally validated.
Retrocopy orthology:
Oryza longistaminata does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.