RetrogeneDB ID: | retro_omer_16 | ||
Retrocopylocation | Organism: | Oryza meridionalis | |
Coordinates: | 3:16885122..16886214(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | OMERI03G18090 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | OMERI05G16600 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 64.17 % |
Parental protein coverage: | 59.86 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | RYGVTSVCGRRREMEDAVSIRPDFLP---GSTSSGKHHFFGVFDGHGCSHVARMCQDRMHELVVDAYKKA |
R.G..SV.GRRREMEDAVS.R..F.....G........F.GVFDGHGCSHVA..C..RMHELV....... | |
Retrocopy | RHGAASVAGRRREMEDAVSLREAFAAPADGEVAAARCDFYGVFDGHGCSHVADACRERMHELVAEEMGAG |
Parental | VSGKEAAAAAP--AWKDVMEKGFARMDDEATSWAKSRTGGEPACRCELQTPARCDHVGSTAVVAVVGPNR |
.....AAAA.....W..VME..FARMD.E.........G....CRCE.Q....CDHVGSTAVVAVV.... | |
Retrocopy | SPAAAAAAAREPASWTGVMERSFARMDAEVIAGCRAESG---RCRCEGQ---KCDHVGSTAVVAVVEESS |
Parental | VVVANSGDSRAVLCRAGVPVPLSVDHKPDRPDELERIQAAGGRVIYWDGARVLGVLAMSRAIGDGYLKPY |
VVVAN.GDSRAVLCR.G.PV.LS.DHKPDRPDELERI.AAGGRVI.W.GARVLGVLAMSR.IGD.YLKPY | |
Retrocopy | VVVANCGDSRAVLCRGGAPVQLSSDHKPDRPDELERIEAAGGRVIFWEGARVLGVLAMSRSIGDAYLKPY |
Parental | VTSEPEVTLTERADDDECLILASDGLWDVVTNEMACEVVRACFR |
VT..PEVT.T.R.D.DECLILASDGLWDVV.NE.ACEV...C.R | |
Retrocopy | VTAVPEVTVTGRSDADECLILASDGLWDVVSNEAACEVAQSCLR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Oryza sativa indica | BGIOSGA017925 | 1 retrocopy | |
Oryza glumaepatula | OGLUM05G20150 | 1 retrocopy | |
Oryza meridionalis | OMERI05G16600 | 1 retrocopy |
retro_omer_16 ,
|
Oryza nivara | ONIVA05G19940 | 1 retrocopy | |
Oryza glaberrima | ORGLA05G0165000 | 1 retrocopy | |
Oryza rufipogon | ORUFI05G20280 | 1 retrocopy |