RetrogeneDB ID: retro_onil_30

Retrocopy location

• Organism: Tilapia (Oreochromis niloticus)
• Coordinates: GL831182.1:3862893..3868698(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSONIG00000021261
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: smyhc3
• Ensembl ID: ENSONIG00000008086
• Aliases: None
• Description: slow myosin heavy chain 3 [Source:ZFIN;Acc:ZDB-GENE-080930-1]

Sequence

>retro_onil_30
ATGGGCGACTCTCTGATGGCCGAGTTTGGGAAGGCTGCTCCTTACCTGAGGAAGTCTGAGAAGGAGCGTCTGGAGGCTCA
GACCAGACCCTTTGACATCAAGACTGAATGTTTTGTAGTTGACACTAAAGAAGAATATGTCAAGGGAAAAATCCTGAGCA
AGGACGGAGGGATGGTGACGGTCCAGAAGGAAGATGGAACAACGGTGACAGTTAAGGAATCTGACACTCACCCCCAGAAC
CCACCCAAGTTTGATAAAATCGAAGACATGGCAATGTTTACATTCCTCCACGAGCCCGCCGTGCTGTTTAACCTCAAAGA
GCGTTACGCAGCCTGGATGATCTATACCTACTCCGGGCTCTTCTGTGTCACCGTCAACCCCTACAAGTGGCTTCCTGTCT
ATGATGCTGAAGTGGTGGCTGCCTACAGGGGGAAGAAGAGGAGCGAGGCCCCTCCTCACATCTTTTCCATTTCTGATAAT
GCCTACCAGTACATGCTGACAGACCGGGAGAACCAGTCGGTCCTCATCACCGGAGAATCTGGAGCAGGAAAGACTGTGAA
CACCAAGAGAGTCATTCAGTACTTTGCCAGCATCGCTGCAGTTGGTGGTGCAAGCAAAAAAGACAGCAGCAAGGGGACTC
TGGAGGATCAAATCATCCAGGCGAACCCGGCACTGGAGGCCTTTGGCAATGCCAAAACGGTGAGAAACGACAACTCGTCA
CGTTTTGGAAAATTTATCCGAATCCATTTCGGCACGAGCGGTAAGCTGTCGTCTGCTGACATAGAGACGTATCTGCTAGA
GAAGTCACGAGTTACCTTTCAGCTAAAGGCCGAAAGGAATTACCACATATTTTACCAGATCCTGTCCAATCAGAAGCCAG
AGTTGTTGGACATGCTGTTGATCACCAACAACCCATATGACTACTCCTACATCTCCCAAGGAGAGGTAACAGTTGCTTCC
ATCAACGACTCGGAGGAGCTGATGGCCACCGATGGTGCCTTTGATGTGCTTGGCTTCACTCCAGAGGAGAAAATGAGTGT
CTACAAGCTAACTGGTGCCATTATGCACTATGGCAACATGAAGTTCAAACAGAAGCAGCGCGAGGAGCAGGCTGAACCTG
ATGGAACTGAGGCTGCTGATAAATCAGCTTACTTGATGGGGCTCAACTCTGCTGATCTCATCAAAGGGCTTTGCCACCCC
CGAGTTAAGGTAGGAAATGAATATGTCACCAAAGGGCAGAGTGTGGACCAAGTTTACTATGCCATTGGTGCTCTGGCTAA
GTCAGTGTATGAGAAGATGTTCAATTGGATGGTGGTGAGAATTAACCAATCACTGGACACCAAACAGCACCGTCAGTACT
TCATAGGAGTGCTGGACATCGCCGGGTTTGAGATCTTTGATTTCAACACCTTTGAGCAGCTGTGCATCAACTTTACCAAT
GAGAAACTGCAACAGTTTTTCAACCACCACATGTTCATCTTGGAGCAAGAGGAGTACAAAAAAGAAGGAATCGAATGGGA
GTTCATTGACTTTGGCATGGACCTCCAGGCCTGCATAGACTTGATTGAGAAACCTCTGGGGATCCTGTCCATTCTGGAGG
AAGAATGCATGTTTCCCAAAGCTAGCGACCAGACCTTCAAGGCCAAGCTCTATGACAACCATCTGGGTAAGAACAAGATG
TTTGAGAAGCCTCGGGCAGCAAAGGGGAAAGCAGAGGCCCATTTCGCCCTTGTTCACTATGCTGGGACAGTGGACTACAA
CATCGCTGGCTGGCTGGTCAAAAACAAAGACCCCCTAAATGAGACAGTGGTTGGTCTTTATCAGAAATCCTCTCTGAAGC
TTCTCAGTCTTCTGTTTTCAAACTATGCAGGAGCTGATGGAGGAGACAAGGGAAGTGGAAAAGGAGCCAAGAAGAAAGGC
TCCTCCTTTCAGACGGTGTCTGCGCTTCACAGAGAAAACCTGAACAAGCTGATGACAAACCTGAAGACCACTCATCCACA
CTTTGTCCGCTGTCTGATTCCTAATGAAAGGAAAACTCCAGGAGTCATGGACAACTGCCTCGTGATGCACCAGCTACGCT
GTAATGGGGTCCTGGAAGGCATCCGGATTTGCAGGAAAGGTTTTCCAAACAGGGTGCTCTACGGAGACTTCAAACAGAGG
TACAGGATCTTGAATGCATCCGCCATCCCAGAGGGTCAGTTCATAGACTGCAAGAAAAGTACTGAAAAGCTGTTAGGATC
GCTGGACATTGACCACACTCAGTATAAGTTTGGTCACACAAAAGTCTTTTTTAAAGCCGGCCTGCTGGGTACACTGGAGG
AGATGCGAGATGAGCAACTCTCTCGAATCATCACCAGGATCCAGGCCAATGCCCGAGGGCTCCTCATGAGGAAGGAGTTT
ATTAAGCTTGTGGAACGTAGAGATGCCCTGATGGTCATTCAGTGGAACCTTCGGTCTTTCCTTGGGGTGAAAAACTGGCC
CTGGATGAAACTCTTCTTCAAGATCAAACCCCTGCTGAAGAGTGCAGAGTCTGAGAAGGAGATGGCCAACATGAAGGATG
AATTCAACAAGCTAAAGGAAACTCTGGAGAAATCAGAGGCAAGACGAAAAGAACTGGAGGAGAAAATAGTGACTCTCCTC
CAAGAGAAGAATGATCTGACCCTTCAGATTCAGTCTGAACAGGACACCCTAACTGATGCTGAGGAACGCTGTGAACAGCT
GATCAAGAGTAAGATTCAACTGGAGGCAAAGCTAAAAGAAATGACAGAAAGACTGGAGGATGAAGAGGAGCTGAACGCTG
ATCTGACAGCAAAGAAACGCAAGCTTGAAGATGAATGTTCAGAGCTGAAGAAGGACATAGATGACCTGGAGCTAACGTTA
GCCAAGGTGGAAAAAGAGAAACATGCTACAGAGAATAAGGTGAAAAACCTGATGGAGGAGATGGCTTCACAGGATGAGAA
CATCGCAAAGCTAACCAAAGAGAAGAGGGCGCTGCAGGAGGCTCACCAGCAAACTCTGGATGACCTGCAGAGTGAAGAAG
ACAAAGCTAACACTTTGACCAAAGCTAAAGCTAAGCTGGAGCAACAAGTGGATGATCTGGAGGGATCGCTGGAGCAAGAG
AAGAAAGTCAGGATGGACCTGGAGCGCTCAAAGAGGAAGCTCGAGGGAGACCTGAAACTGATCCAGGAGAACTTGATGGA
CTTGGAGAATGACAAGCAGCAGCTGGAGGAAAAAATCAAGAAGAAAGACTTTGAGGTCACCCAAATAACTTCAAGACTAG
AAGATGAGCAGATTGCATCAGTTCAGCTCCAGAAGAAGCTCAAAGAAAGCCAGGCAAGAATTGAGGAGGTGGAGGAGGAG
CTGGATGCTGAGCGAGCAGCCCGGGCCAAGGTGGAGAAACAGCGTTCTGATCTTTCCCGCGAGCTTGAGGACATCAGTGA
ACGTCTAGAGGAAGCTGGAGGAGCCACATCAGCTCAGGTGGAGCTGAATAAAAAGAGAGAAGCTGAGTTTCAGAAGCTGC
GTAGAGAGCTGGAGGAATCAACCCTGCAACATGAGGCCACCGCTGCCACCCTGAGGAAGAAACATGCCGACACCGTCGCT
GAACTGGGAGAACAGATTGATAACCTTCAGCGTGTCAAACAAAAACTGGAGAAGGAAAAGAGTGAGCTGAAGCTAGAGCT
CGATGACTTGTGCTCAAACATGGAAAATGTAGTGAAGACAAAGGCAAACTTTGAGAAAATGTGCCGAACGATGGAAGACA
ACATGAATGAGTACAAGAGCAAATGTGAGGAGGCTCAAAGGACCATCAATGAGCTGACAACCCAGAGGGCCAAGCTCCTC
ACTGAAAATGGTGAGCTTGGCCGGCAGCTGGAGGAGAAGGATTGTCTGATATCACAGCTTACTCGAGGGAAGAACTCGTA
CAACCAGCAGATGGAAGATCTGCGCAGACAGCTGGAGGAGGAACTAAAGGCAAAGAACGCTCTTGCCCATGCTGTTCAGT
CTGCTCGTCATGACTGTGATCTGCTCCGAGAACAATTTGAGGAAGAGCAGGAAGCCAAGGCTGAACTGCAGAGAGCTCTG
TCTAAATCCAACACTGAAATCTCTGCATGGAGGACCAAATATGAAACGGACGGCATCCAGAGAACTGAGGAGCTGGAAGA
AGCAAAAAAGAAGCTTGTTCAGAGACTGCAGGAGGCCGAGGAGGCCATTGAGGCTGTGAACGCAAAGTGTTCGTCCCTTG
AGAAAACCAAACACCGGCTCCAAAATGAGATTGAAGACCTCATGCTGGACCTGGAGAGATCTAATGCGGCATCCGCAGCA
CTGGACAAAAAACAAAGAACCTTTGACAAAGTCTTGGCAGAGTGGAAGCAAAAATTTGAGGAGTCGCAGTGTGAGTTAGA
GGCATCTCAGAAAGAGGCTCGATCTCTGAGCACTGAGCTCTTCAAACTCAGGAATGCCTATGAAGAATGTCTGGATCAAC
TCGAGACAATGAAGAGAGAGAATAAAAATCTCCAAGAAGAAATCTCAGACCTCACTGACCAGCTGGGAGAAGGTGGCCGC
AGCGCCCACGAACTAGAGAAGATCAGAAAGGAACTTGAACAAGAAAAGGTTGAGCTACAGTCGGCGCTGGAGGAAGCTGA
AGGTTCCCTGGAGCATGAAGAGAGCAAGATCCTCAGAGCTCAACTGGAGTTCAACCAAGTGAAGGCTGACATGGAGCGCA
AGCTGGCCGAGAAAGACGAGGAAATGGACCAGGCCAAGAGGAACTACCAGCGTATGGTGGAATCACTACAGTCCTCTCTG
GAGTCCGAAACCAGGAGCCGAAATGAAGCCATGAGAGTAAAGAAGAAGATGGAAGGTGACCTCAATGAGATGGAGATTCA
GCTGAGCCAAGCTAACAGGCAGGCAGCTGAAGCCCAGAAACAGGTGAAGACCCTCCAGGCGTTCCTGAAGGACACTCAGC
TGCAACTAGATGACACGCAGCATGGCAACGATGACCTGAAAGAAAACATTGCTCTGCTTGAACGCCGAAACAACCTCATC
CAGGCTGAACTGGAGGAAGTGAGAGCCGCACTCGAGCAGACTGAGAGAAGTCGGAAACTGGCCGAACAGGAGCTGACCGA
GGCAACGGAGCGAATGCAACTCCTGCACTCCCAAAACACCAGCCTGATCAACCAGAAGAAGAAGCACGAAGCAGACCTCC
TACACCTGCAGTGTGAGGTGGAGGAAGCCATACAGGAGAACCGCAATGCTGAGGAGAAGGCAAAGAAGGCGATCACAGAT
GCAGCCATGATGGCTGAGGAGCTGAAGAAGGAGCAGGACACCAGCGCCCATCTGGAGCGCATGAAGAAGAACATGGAGCA
GACCATCAAAGACCTGCAGCACCGTCTGGATGAGGCCGAGCAGATCGCCATGAAGGGTGGCAAGAAGCAGCTCCAGAAAC
TGGAGACTCGCATCAAAGAGCTGGAGAATGAGCTGGAGGCAGAGCAGAAGAGGGGAGCCGAGTCCATCAAAGGGGTTCGC
AAGTACGAGCGCCGCATCAAAGAGCTCACCTACCAGACCGAGGAGGACCGCAAGAACATGGCCCGCCTCCAGGACCTGGT
CGACAAGCTGCAGCTGAAGGCCAAGTCCTACAAGAGAGCGGCCGAGGAGGCCGAGGAGGCGGCCAACATCAACATGGCAA
AACTACGCAAGCTGCAGCACGAGCTGGAGGAGGCGGAGGAGCGGGCAGACATCGCCGAGTCGCAGGTGAACAAGCTGAGG
GCAAAGACTAGGGATGGATCGTCTAAAAAGGGCCTGGATGAGTGA

Alignment

ORF - retro_onil_30 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 83.39 %
• Parental protein coverage: 99.79 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  GDAIMAEFGSAASFLRKSDKERLEAQTRPFDMKKACFVPDPEVEYVKASVISRDGDKVTVETEFGKTVTH
          GD..MAEFG.AA..LRKS.KERLEAQTRPFD.K..CFV.D...EYVK....S.DG..VTV..E.G.TVT.
Retrocopy GDSLMAEFGKAAPYLRKSEKERLEAQTRPFDIKTECFVVDTKEEYVKGKILSKDGGMVTVQKEDGTTVTV

Parental  KEADIHPQNPPKFDKIEDMAMFTFLHEPAVLFNLKERYAAWMIYTYSGLFCVTVNPYKWLPVYDKSVVAA
          KE.D.HPQNPPKFDKIEDMAMFTFLHEPAVLFNLKERYAAWMIYTYSGLFCVTVNPYKWLPVYD..VVAA
Retrocopy KESDTHPQNPPKFDKIEDMAMFTFLHEPAVLFNLKERYAAWMIYTYSGLFCVTVNPYKWLPVYDAEVVAA

Parental  YRGKKRSEAPPHIYSISDNAYQYMLADRENQSILITGESGAGKTVNTKRVIQYFASIAAVSGKKDEKQEK
          YRGKKRSEAPPHI.SISDNAYQYML.DRENQS.LITGESGAGKTVNTKRVIQYFASIAAV.G....K...
Retrocopy YRGKKRSEAPPHIFSISDNAYQYMLTDRENQSVLITGESGAGKTVNTKRVIQYFASIAAVGGAS-KKDSS

Parental  KGTLEDQIIQANPALEAFGNAKTIRNDNSSRFGKFIRIHFGVSGKLASADIETYLLEKSRVTYQLKAERD
          KGTLEDQIIQANPALEAFGNAKT.RNDNSSRFGKFIRIHFG.SGKL.SADIETYLLEKSRVT.QLKAER.
Retrocopy KGTLEDQIIQANPALEAFGNAKTVRNDNSSRFGKFIRIHFGTSGKLSSADIETYLLEKSRVTFQLKAERN

Parental  YHIFYQILSQQKPELLEMLLITNNPYDYAYISQGETTVASINDSEELMATDEAFDVLGFTQEEKNGIYKL
          YHIFYQILS.QKPELL.MLLITNNPYDY.YISQGE.TVASINDSEELMATD.AFDVLGFT.EEK...YKL
Retrocopy YHIFYQILSNQKPELLDMLLITNNPYDYSYISQGEVTVASINDSEELMATDGAFDVLGFTPEEKMSVYKL

Parental  TGAIMHYGNMKFKQKQREEQAEPDGTEDVDKAAYLMGLNSADLIKGLCHPRVKVGNEWVTKGQSVQQVYY
          TGAIMHYGNMKFKQKQREEQAEPDGTE..DK.AYLMGLNSADLIKGLCHPRVKVGNE.VTKGQSV.QVYY
Retrocopy TGAIMHYGNMKFKQKQREEQAEPDGTEAADKSAYLMGLNSADLIKGLCHPRVKVGNEYVTKGQSVDQVYY

Parental  SIGALAKSVYEKMFLWMVVRINQSLDTKQPRQYFIGVLDIAGFEIFDFNTFEQLCINYTNEKLQQFFNHH
          .IGALAKSVYEKMF.WMVVRINQSLDTKQ.RQYFIGVLDIAGFEIFDFNTFEQLCIN.TNEKLQQFFNHH
Retrocopy AIGALAKSVYEKMFNWMVVRINQSLDTKQHRQYFIGVLDIAGFEIFDFNTFEQLCINFTNEKLQQFFNHH

Parental  MFVLEQEEYKKEGIVWEFIDFGMDLAACIELIEKPMGIMSILEEECMFPKASDSTFKAKLYDNHLGKSPN
          MF.LEQEEYKKEGI.WEFIDFGMDL.ACI.LIEKP.GI.SILEEECMFPKASD.TFKAKLYDNHLGK...
Retrocopy MFILEQEEYKKEGIEWEFIDFGMDLQACIDLIEKPLGILSILEEECMFPKASDQTFKAKLYDNHLGKNKM

Parental  FQKPRVVKGKAEAHFSLIHYAGTVDYNISNWLEKNKDPLNETVVGLYQKSTLKLLSMLFMGYAGAESGQD
          F.KPR..KGKAEAHF.L.HYAGTVDYNI..WL.KNKDPLNETVVGLYQKS.LKLLS.LF..YAGA..G..
Retrocopy FEKPRAAKGKAEAHFALVHYAGTVDYNIAGWLVKNKDPLNETVVGLYQKSSLKLLSLLFSNYAGADGGDK

Parental  GGGKGKGGKKKGSSFQTVSALHRENLNKLMTNLRSTHPHFVRCIIPNETKTPGAMENPLVMHQLRCNGVL
          G.GKG...KKKGSSFQTVSALHRENLNKLMTNL..THPHFVRC.IPNE.KTPG.M.N.LVMHQLRCNGVL
Retrocopy GSGKG--AKKKGSSFQTVSALHRENLNKLMTNLKTTHPHFVRCLIPNERKTPGVMDNCLVMHQLRCNGVL

Parental  EGIRICRKGFPNRIQYGDFKQRYRILNPSAIPEGQFIDNKKASEKLLGSLDIDHEQYKLGHTKVFFKAGL
          EGIRICRKGFPNR..YGDFKQRYRILN.SAIPEGQFID.KK..EKLLGSLDIDH.QYK.GHTKVFFKAGL
Retrocopy EGIRICRKGFPNRVLYGDFKQRYRILNASAIPEGQFIDCKKSTEKLLGSLDIDHTQYKFGHTKVFFKAGL

Parental  LGVLEEMRDDRLALILTGIQARSRGLLARIEFQKIVERRDALLVIQWNIRAFMGVKNWPWMKMFFKIKPL
          LG.LEEMRD..L..I.T.IQA..RGLL.R.EF.K.VERRDAL.VIQWN.R.F.GVKNWPWMK.FFKIKPL
Retrocopy LGTLEEMRDEQLSRIITRIQANARGLLMRKEFIKLVERRDALMVIQWNLRSFLGVKNWPWMKLFFKIKPL

Parental  LKSAETEKEMANMKEEFTKLKEAYAKSEARKKELEEKMVTLLQEKNDLQLQVQSEQDNLSDAEERCEGLI
          LKSAE.EKEMANMK.EF.KLKE...KSEAR.KELEEK.VTLLQEKNDL.LQ.QSEQD.L.DAEERCE.LI
Retrocopy LKSAESEKEMANMKDEFNKLKETLEKSEARRKELEEKIVTLLQEKNDLTLQIQSEQDTLTDAEERCEQLI

Parental  KSKIQLEAKVKELTERLEDEEEMNAELTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHATENKVKNLT
          KSKIQLEAK.KE.TERLEDEEE.NA.LTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHATENKVKNL.
Retrocopy KSKIQLEAKLKEMTERLEDEEELNADLTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHATENKVKNLM

Parental  EEMAALDEIIAKLTKEKKALQEAHQQTLDDLQSEEDKVNSLTKAKVKLEQQVDDLEGSLEQEKKVRMDLE
          EEMA..DE.IAKLTKEK.ALQEAHQQTLDDLQSEEDK.N.LTKAK.KLEQQVDDLEGSLEQEKKVRMDLE
Retrocopy EEMASQDENIAKLTKEKRALQEAHQQTLDDLQSEEDKANTLTKAKAKLEQQVDDLEGSLEQEKKVRMDLE

Parental  RAKRKLEGDLKLTQENIMDLENDKQQLEEKLKKKDFEISQHLSKIEDEQAMSAQLQKKLKELQARIEELE
          R.KRKLEGDLKL.QEN.MDLENDKQQLEEK.KKKDFE..Q..S..EDEQ..S.QLQKKLKE.QARIEE.E
Retrocopy RSKRKLEGDLKLIQENLMDLENDKQQLEEKIKKKDFEVTQITSRLEDEQIASVQLQKKLKESQARIEEVE

Parental  EELEAERAARAKVEKQRADLARELEEISERLEEAGGATAAQIELNKKREAEFQKMRRDLEEATLHHEATA
          EEL.AERAARAKVEKQR.DL.RELE.ISERLEEAGGAT.AQ.ELNKKREAEFQK.RR.LEE.TL.HEATA
Retrocopy EELDAERAARAKVEKQRSDLSRELEDISERLEEAGGATSAQVELNKKREAEFQKLRRELEESTLQHEATA

Parental  ATLRKKNADSVADLGEQIDNLQRVKQKLEKEKSELKLELDDVVSNMEQLAKAKSNLEKLCRTLEDQVSEY
          ATLRKK.AD.VA.LGEQIDNLQRVKQKLEKEKSELKLELDD..SNME...K.K.N.EK.CRT.ED...EY
Retrocopy ATLRKKHADTVAELGEQIDNLQRVKQKLEKEKSELKLELDDLCSNMENVVKTKANFEKMCRTMEDNMNEY

Parental  RTKSEEAQRSINDFTMQKAKFQTENGELTRQLEEKDSLVSQLTRAKLSYTQQIEDLKRQLEEEVKAKNAL
          ..K.EEAQR.IN..T.Q.AK..TENGEL.RQLEEKD.L.SQLTR.K.SY.QQ.EDL.RQLEEE.KAKNAL
Retrocopy KSKCEEAQRTINELTTQRAKLLTENGELGRQLEEKDCLISQLTRGKNSYNQQMEDLRRQLEEELKAKNAL

Parental  AHAVQSARHDCDLLREQFEEEQEAKAELQRSMSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQD
          AHAVQSARHDCDLLREQFEEEQEAKAELQR..SK.N.E...WRTKYETD.IQRTEELEEAKKKL.QRLQ.
Retrocopy AHAVQSARHDCDLLREQFEEEQEAKAELQRALSKSNTEISAWRTKYETDGIQRTEELEEAKKKLVQRLQE

Parental  AEEAVEAANAKCSSLEKTKHRLQGEIEDLMVDVERSNAAAAALDKKQRNFDKVLAEWKQKYEESQAELEG
          AEEA.EA.NAKCSSLEKTKHRLQ.EIEDLM.D.ERSNAA.AALDKKQR.FDKVLAEWKQK.EESQ.ELE.
Retrocopy AEEAIEAVNAKCSSLEKTKHRLQNEIEDLMLDLERSNAASAALDKKQRTFDKVLAEWKQKFEESQCELEA

Parental  AQKDARSLSTELFKLKNSYEEALEHLETMKRENKNLQEEISDLTEQLGEGGKNIHELEKIRKQLEQEKAE
          .QK.ARSLSTELFKL.N.YEE.L..LETMKRENKNLQEEISDLT.QLGEGG...HELEKIRK.LEQEK.E
Retrocopy SQKEARSLSTELFKLRNAYEECLDQLETMKRENKNLQEEISDLTDQLGEGGRSAHELEKIRKELEQEKVE

Parental  IHTALEEAEGTLEHEEGKILRAQLEFNQVKADMERKMTEKDEEMEQAKRNHQRVTDTLQSSLEAEIRSRN
          ...ALEEAEG.LEHEE.KILRAQLEFNQVKADMERK..EKDEEM.QAKRN.QR....LQSSLE.E.RSRN
Retrocopy LQSALEEAEGSLEHEESKILRAQLEFNQVKADMERKLAEKDEEMDQAKRNYQRMVESLQSSLESETRSRN

Parental  EALRLKKKMEGDLNEMEIQLSQANRQAAEAQKQLKGVHAHMKDSQLQLDEALRANDDLKENIAIVERRNN
          EA.R.KKKMEGDLNEMEIQLSQANRQAAEAQKQ.K...A..KD.QLQLD.....NDDLKENIA..ERRNN
Retrocopy EAMRVKKKMEGDLNEMEIQLSQANRQAAEAQKQVKTLQAFLKDTQLQLDDTQHGNDDLKENIALLERRNN

Parental  LMQAELDELRALVEQTERGRKLAEQELLDVSERVQLLHSQNTSLLNQKKKLESDTAQLQNEVEEAVQECR
          L.QAEL.E.RA..EQTER.RKLAEQEL....ER.QLLHSQNTSL.NQKKK.E.D...LQ.EVEEA.QE.R
Retrocopy LIQAELEEVRAALEQTERSRKLAEQELTEATERMQLLHSQNTSLINQKKKHEADLLHLQCEVEEAIQENR

Parental  NAEEKAKKAVTDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIAMKGGKKQVQKLESRV
          NAEEKAKKA.TDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIAMKGGKKQ.QKLE.R.
Retrocopy NAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNMEQTIKDLQHRLDEAEQIAMKGGKKQLQKLETRI

Parental  RELENELEMEQRKSSDSVKGIRKYERRIKELTYQTEEDKKNLNRLQDLVDKLQLKVKSYKRAAEEAEEQS
          .ELENELE.EQ.....S.KG.RKYERRIKELTYQTEED.KN..RLQDLVDKLQLK.KSYKRAAEEAEE..
Retrocopy KELENELEAEQKRGAESIKGVRKYERRIKELTYQTEEDRKNMARLQDLVDKLQLKAKSYKRAAEEAEEAA

Parental  NANLSKLRKLQHELEEAEERADIAESQVNKLRAKSRDSGAKKG
          N.N..KLRKLQHELEEAEERADIAESQVNKLRAK.RD...KKG
Retrocopy NINMAKLRKLQHELEEAEERADIAESQVNKLRAKTRDGSSKKG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Oreochromis niloticus was not studied using RNA-Seq expression data.

ChIP-Seq

Oreochromis niloticus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_onil_30 retrocopy.

TSS

Oreochromis niloticus was not studied using FANTOM5 data.

Lab

retro_onil_30 was not experimentally validated.

Homology

Retrocopy orthology:

Oreochromis niloticus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Danio rerio	ENSDARG00000071430	1 retrocopy	retro_drer_2,
Gadus morhua	ENSGMOG00000009387	1 retrocopy	retro_gmor_5,
Oreochromis niloticus	ENSONIG00000008086	1 retrocopy	retro_onil_30 ,
Tetraodon nigroviridis	ENSTNIG00000003838	1 retrocopy	retro_tnig_26,