>retro_opri_1086
CTACACACCCAGGCATGGAAGAGAAGGTGGTTCGTGTTACGCAGTGGCCGTTTAACTGGAGATCCTGATGTGTTGGAATA
TTACAAAAATGATCATGCCAAGAAGCCAATTCGTATTATTGATTTAAATTTATGTCAGCAAGTTGATGCTGGATTGACAT
TTAATAAGAAAGAGTTTGAAAACCGCTACATTTTTTATATCAACACTATTGACCGGATTTTCTACTTGGTAGCAGACAGT
GAGGAGGAAATGAATAAGTGGGTTCGTTGCATTTGTGACATCTGTGGGTTTAATCCTACAGAAGAAGATCCTGTGAAGCT
GCCTGGTAGCTCCTTGCAAGCACAAGCTCATTTGCCCTTAGCTATAAACACAGCACCACCATCCTCCCAGATGGACTCCT
CCACTCTACCTCCTTCCTATCAGCTCATCAGCCTTCCGCCACCACATGCAGAAACTCTTGGCATCCAGGAGGATCCCCAA
GACTACCTCTTGCTAATCAACTGTCAAAGCAAGAAGCCTGAACCCACCAGAACACATGCCGACTCTGCAAAATCCACCTC
TTCTGAAACAGACTGTAATGATAACATCCCTTATCACAAAAATCCACCCTCCTCCCAGAGCAAACAGGGAGTGAATGGCT
TTTTCCAGCAGCAAATGCTGTATGACTCTCCCCCATCACGGGCTGCCTCTGTGTCCATAGACCCCAACCTTTACAACCTG
CCCAGGAGTTACTCTCATGATGTGCTACCAAAGGCATCTCCCTCAAGTACTGAAACAGATGGAGAACTCTATGTTTTTAA
TACCCCAACTGGGACATCAAGTATAGAGGCTCAAATGAGGCATGACTCCATCAGCTATGACATTCCTCCAACACCCGGTA
GTACTTACCAGGTTCCACGAACATTTCCTGATGGCACCTTGGGACAGACATCCAAGCTAGACACTATTCTTGATATCCCA
CCATCTCGGCCACCGAAGCCGCATCCAGCTCACGACAGATTTCCCGTGGAAATGTCTGGGCTCCCACGCACGACTTCCGA
CACCGACAGTAGCTACTGCATCCCTACAGCAGGGGTGCTGCCATCACGTAGTAATACCATTTCCACTGTGGAGCTGAACA
AATTGCGAAAAGATGCTAGTTCTCAAGACTGCTATGATGTTCCACGAACATTTCCAAGTGATAGATCTAGCTCACTTGAA
GGCTTCCATAATCACTTTAAAATCAAAAATGTGTTGACAGTGGGAAGTGTATCAAGTGAAGAACTGGATGAAAATTACGT
C
ORF - retro_opri_1086 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
96.02 % |
Parental protein coverage: |
59.22 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | LKRYAWKRRWFVLRSGRLTGDPDVLEYYKNDHAKKPIRIIDLNLCQQVDAGLTFNKKEFENRYIFYINTI |
| L...AWKRRWFVLRSGRLTGDPDVLEYYKNDHAKKPIRIIDLNLCQQVDAGLTFNKKEFENRYIFYINTI |
Retrocopy | LHTQAWKRRWFVLRSGRLTGDPDVLEYYKNDHAKKPIRIIDLNLCQQVDAGLTFNKKEFENRYIFYINTI |
|
Parental | DRIFYLVADSEEEMNKWVRCICDICGFNPTEEDPVKPPGSSLQAQADLPLAINTAPPSSQMDSSALPPSY |
| DRIFYLVADSEEEMNKWVRCICDICGFNPTEEDPVK.PGSSLQAQA.LPLAINTAPPSSQMDSS.LPPSY |
Retrocopy | DRIFYLVADSEEEMNKWVRCICDICGFNPTEEDPVKLPGSSLQAQAHLPLAINTAPPSSQMDSSTLPPSY |
|
Parental | QLISLPPPHAETLGIQEDPQDYLLLINCQSKKPEPTRTHADSAKSTSSETDCNDNVPSHKNPPSSQSKHG |
| QLISLPPPHAETLGIQEDPQDYLLLINCQSKKPEPTRTHADSAKSTSSETDCNDN.P.HKNPPSSQSK.G |
Retrocopy | QLISLPPPHAETLGIQEDPQDYLLLINCQSKKPEPTRTHADSAKSTSSETDCNDNIPYHKNPPSSQSKQG |
|
Parental | VNGFFQQQMLYDSPPSRAASVSIDPNLYNLPRSYSHDVLPKASPSSTETDGELYVFNTPSGTSSIEAQMR |
| VNGFFQQQMLYDSPPSRAASVSIDPNLYNLPRSYSHDVLPKASPSSTETDGELYVFNTP.GTSSIEAQMR |
Retrocopy | VNGFFQQQMLYDSPPSRAASVSIDPNLYNLPRSYSHDVLPKASPSSTETDGELYVFNTPTGTSSIEAQMR |
|
Parental | HVSISYDIPPTPGSTYQVPRTFPDGTLGQTSKLDTIPDIPPPRPPKPHPAHDRSPVETSGLPRTTSDTDS |
| H.SISYDIPPTPGSTYQVPRTFPDGTLGQTSKLDTI.DIPP.RPPKPHPAHDR.PVE.SGLPRTTSDTDS |
Retrocopy | HDSISYDIPPTPGSTYQVPRTFPDGTLGQTSKLDTILDIPPSRPPKPHPAHDRFPVEMSGLPRTTSDTDS |
|
Parental | SYCIPTAGVPPSRSNTISTVELNKLRKDASSQDCYDIPRTFPSDRSSSLEGFHNHFKIKNVLTVGSVSSE |
| SYCIPTAGV.PSRSNTISTVELNKLRKDASSQDCYD.PRTFPSDRSSSLEGFHNHFKIKNVLTVGSVSSE |
Retrocopy | SYCIPTAGVLPSRSNTISTVELNKLRKDASSQDCYDVPRTFPSDRSSSLEGFHNHFKIKNVLTVGSVSSE |
|
Parental | ELDENYV |
| ELDENYV |
Retrocopy | ELDENYV |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Ochotona princeps was not studied using RNA-Seq expression data.
Ochotona princeps was not studied using ChIP-Seq data.
Ochotona princeps was not studied using EST data.
Ochotona princeps was not studied using FANTOM5 data.
retro_opri_1086 was not experimentally validated.
Retrocopy orthology:
Ochotona princeps does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
3 retrocopies.