RetrogeneDB ID: | retro_opri_327 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | GeneScaffold_5259:44145..44616(+) | ||
Located in intron of: | ENSOPRG00000006014 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YBX2 | ||
Ensembl ID: | ENSOPRG00000013773 | ||
Aliases: | None | ||
Description: | Y box binding protein 2 [Source:HGNC Symbol;Acc:17948] |
Percent Identity: | 53.42 % |
Parental protein coverage: | 54.33 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | PATAASGTPAPPARSQADKPVLAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSV |
P.T...G.P...A...ADK..LA..VLG.VKWFNV...YGFI...DT.ED.FVHQ.AI..NNP.K.L.SV | |
Retrocopy | PSTTGMGLPEL-AHASADKKILATKVLGRVKWFNVKERYGFITTTDTQEDIFVHQSAIQKNNPWKYLPSV |
Parental | GDGETVEFDVVEGEKGAEAANVTGPGGVSVKGSRYALNR----RSFRRFILRPRSAASSLMVTEASSVGQ |
GDGE.VEFDVVEG.KG.EAANVTGPGGV.V.GS.Y...R....RS.RR...RP..A...L.....SS.G. | |
Retrocopy | GDGELVEFDVVEGKKGVEAANVTGPGGVAVQGSKYVPERTRSRRSPRRRAPRPHYAHGCLPTDSDSSDG- |
Parental | NLGSEGERAEDSGQRLRRRPP |
.....G..........RRR.P | |
Retrocopy | --AADGQACPGWRRVRRRRLP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Loxodonta africana | ENSLAFG00000014006 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000008050 | 11 retrocopies | |
Ochotona princeps | ENSOPRG00000013773 | 5 retrocopies |