>retro_opun_17
ATGAGAGGCGCCGTGTTGGTGGCCGTGGCGGCCGCCGTTGGCAACCTGCTGCAAGGATGGGACAACGCCACCATCGCCGG
CGCCGTGCTGTACATCAAGCGTGAGTTCGCCCTCGAGTCGCAGCCTGCCGTCGAGGGCCTCGTCGTCGCCATGTCCCTCA
TCGGCGCCACCATCATCACCACCTTCTCCGGCCCGGTCTCCGACGTCGTCGGCCGCCGCCCCATGCTCATCGCCTCCTCT
CTCCTCTACTTCGCCGGCGGCCTCATCATGCTCTGGTCACCCAACGTCTATGTCCTCCTCCTCGCCAGGCTCGTCGACGG
CTTCGGCGTCGGCCTCGCCGTCACGCTCGTCCCCGTCTACATCTCCGAGACGTCGCCGCCGGAGATCCGCGGCCGCCTCA
ACACGCTGCCGCAGTTCACCGGGTCGGGTGGCATGTTCATGTCCTACTGCATGATCTTCGCCATGACGCTGTCGCCGTCG
CCCAACTGGCGCGTCATGCTCGGCGTGCTGTTCCTTCCCTCGCTGCTCTACCTGTTCGTCACCGTCTTCTACCTGCCGGA
GTCGCCGCGCTGGCTCGTCAGCAAGGGCCGGATGAAGGAGGCCAGGGTTGTACTTGAGATGCTGCGTGGACGGGAGGACG
TCTCCGGCGAGATGGCGCTCCTCGTCGAGGGCCTTGGCACCGGCGGCGACACCGAGATCGAGGACTACGTCGTCGGGCCG
TCCGAGGGCGACGCGGGCGAGAACGAGCAGGCGAGGGACACCGTCACGCTGTACGGGCCGGAGCAGGGGTTGTCGTGGGT
GGCGCAGCCGGTCGCCGGCGGTCGCGGCAGCATGCTGGGGAGCTCGCTGGGTCTGCAGGCGTCGCGTCACGGCAGCATGT
ACGAGCAGATGAAGGATCCCGTGGTGGCGCTGCTCGGGAGCGTCCACGAGCGGCTGCCGGAGTCCGGCGGCGGCGCCGCC
GGGAGCATGAGGGGGAGCACGCTGTTCCCTAACCTCGGGAGCATGCTGAGCGTCAATGAGAGGCCCGGCGGCGACTGGGA
CGAGGAGAACGTGCAGCCGGCCGACGAGGAGGAGGACGAGGAGTACCTCTCCGACGACGGCAAGGACGAAGACGACGGAC
TGCAAGCGCCGCTGCTGTCGCGGCAGAGCACCGACGTGGAGGTCAAGAACGAGGCCTCCTCTGGCCAGATGACGATGCAG
CGGCACAGCAGCATCGGCGGCGTCGAGACGGCGAGCACGATGGGGATCGGCGGCGGGTGGCAGCTGGCGTGGAAGTGGAC
GGAGAAAGTTGGTCCCGACGGCGTCAAGCGCGGCGCCGTGAAGCGCATGTACCTGCACGAGGAGGCCGAGGCCGCCCCCG
GTGGCGACGCTGGCGGCGGCGGCAGCGGCGACGCGCCACCATCGCCGTACGTGCACGCGGCCGCGCTGGTCAGCCGCTCG
ATGCTGTACACCAAGGACGTTCTTATCGGCCAGAGCCCCACCGAGCCGGCGTTCGCGAACCCGCCGGAGGCGGTGGCGGC
GGCGGCGACGACGGGCCCTGTCTGGCGCGAGCTTCTCGAGCCCGGCGTCCGCCACGCCCTCTTCTGCGGCATCACCATCC
AGATCCTCCAGCAATTCTCCGGCATCAACGGCGTGCTCTACTACACGCCACAGATCCTCGACCAGGCCGGCGTCAGCGTC
CTCCTCGCAAGCCTCGGCCTCTCCGGCGACTCCACCTCCATCCTCATCAGCGGCCTCACCACGCTCCTCATGCTCCCGTC
CATCGGAGTCGCCATGCGCCTCATGGACGTGTCCGGCCGCCGCGCGCTCCTCCTCTGGACGCTGCCCGTCCTCGTCGCGT
CCCTCGCCGTCCTCGTGGTGGCGAACGTCGTGCCCATGGCGGCGACGGCGCACGCCGCGCTGTCGACGGGGAGCGTCATC
GTCTACTTCTGCTGCTTCGTCATGGGGTTCGGACCCATCCCGAACATCCTCTGCGCCGAGATCTTCCCGACGAGGGTGAG
GGGACTCTGCATCGCCATCTGCTCGCTCACGTTCTGGCTCGGCGACATCGCCGTCACCTACAGCCTCCCGGTGATGCTCA
GCTCCGTCGGGCTCGCCGGCGTGTTCGCCTTCTACGCCGCCGTGTGCTGCGTCGCGCTCGTGTTCGTCGCGTTCAAGGTG
CCGGAGACGAAGGGCCTCCCGCTCGAGGTCATCATCGAGTTCTTCAACGTCGGCGCCAAGGCCGGCACGTTGCCTGACGA
TGAGTTCCACGCTGAAACTTGA
ORF - retro_opun_17 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
64.33 % |
Parental protein coverage: |
61.26 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MSGAALVAIAASIGNLLQGWDNATIAGAVLYIKKEFKLESEPTVEGLIVAMSLIGATIITTFSGPVSDWI |
| M.GA.LVA.AA..GNLLQGWDNATIAGAVLYIK.EF.LES.P.VEGL.VAMSLIGATIITTFSGPVSD.. |
Retrocopy | MRGAVLVAVAAAVGNLLQGWDNATIAGAVLYIKREFALESQPAVEGLVVAMSLIGATIITTFSGPVSDVV |
|
Parental | GRRPMLILSSILYFLSSLIMLWSPNVYVLLLARLIDGFGIGLAVTLVPLYISETAPSEIRGLLNTLPQFS |
| GRRPMLI.SS.LYF...LIMLWSPNVYVLLLARL.DGFG.GLAVTLVP.YISET.P.EIRG.LNTLPQF. |
Retrocopy | GRRPMLIASSLLYFAGGLIMLWSPNVYVLLLARLVDGFGVGLAVTLVPVYISETSPPEIRGRLNTLPQFT |
|
Parental | GSGGMFLSYCMVFGMSLLPSPDWRIMLGVLAIPSLFFFGLTIFYLPESPRWLVSKGRMAEAKKVLQKLRG |
| GSGGMF.SYCM.F.M.L.PSP.WR.MLGVL..PSL.....T.FYLPESPRWLVSKGRM.EA..VL..LRG |
Retrocopy | GSGGMFMSYCMIFAMTLSPSPNWRVMLGVLFLPSLLYLFVTVFYLPESPRWLVSKGRMKEARVVLEMLRG |
|
Parental | REDVSGEMALLVEGLEVGADTSIEEYIIGPATEPADEHVIDGDKDQITLYGPEEGQSWIARPSKG--PSI |
| REDVSGEMALLVEGL..G.DT.IE.Y..GP....A.E.......D..TLYGPE.G.SW.A.P..G...S. |
Retrocopy | REDVSGEMALLVEGLGTGGDTEIEDYVVGPSEGDAGEN--EQARDTVTLYGPEQGLSWVAQPVAGGRGSM |
|
Parental | LGSVLSL-TSRHGSMVNQSVPLMDPIVTLFGSVHENMPHAGG----SMR-STLFPNFGSMFSVTDQHPKV |
| LGS.L.L..SRHGSM..Q.....DP.V.L.GSVHE..P..GG....SMR.STLFPN.GSM.SV....P.. |
Retrocopy | LGSSLGLQASRHGSMYEQ---MKDPVVALLGSVHERLPESGGGAAGSMRGSTLFPNLGSMLSV-NERPGG |
|
Parental | DQWDEENL----HRDDEEYASDGAGGDYEDNVHSPLLSRQTTSAEGKDIAHHGHRGSALSMRRRSLLEEG |
| D.WDEEN........DEEY.SD..G.D..D....PLLSRQ.T..E.K..A..G.......M.R.S....G |
Retrocopy | D-WDEENVQPADEEEDEEYLSDD-GKDEDDGLQAPLLSRQSTDVEVKNEASSGQ----MTMQRHSSI-GG |
|
Parental | GEAVSSTGIGGGWQLAWKWSEREGEDGKKEGGFKRIYLHQ--EGVPGSRRG |
| .E..S..GIGGGWQLAWKW.E..G.DG.K.G..KR.YLH...E..PG...G |
Retrocopy | VETASTMGIGGGWQLAWKWTEKVGPDGVKRGAVKRMYLHEEAEAAPGGDAG |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Oryza punctata was not studied using RNA-Seq expression data.
Oryza punctata was not studied using ChIP-Seq data.
Oryza punctata was not studied using EST data.
Oryza punctata was not studied using FANTOM5 data.
retro_opun_17 was not experimentally validated.
Retrocopy orthology:
Oryza punctata does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.