>retro_osat_51
ATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACCATCACGCTGGAGGTGGAGAGCAGCGACACGATCCAGAACGTCAA
GGCGAAGGTGCAGGACAAGGAGGGGATCCCGCCGGACCAGCAGCGGCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGGC
GCACGCTGGCCGACTACAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGCCTCCGCGGCGGCCTGAACGTCAAG
GTGAGGACGCTCACCGGCAAGGAGATCGACATCGACATCGAGATGACGGACACGGTGGACAGGATCAAGGAGCGCGTCGA
GGAGAGGGAGGGCATCCCGCCCGTGCAGCAGAGGCTCATCTACGGCGGGAAGCAGCTTGCCGACGACAAGACGGCGCACG
ACTACAAGATCGAGGCTGGCTCCGTCCTCCACCTCGTCCTCGCTCTCCGAGGCGGG
ORF - retro_osat_51 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
90.79 % |
Parental protein coverage: |
99.35 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV |
| MQIFVKTLTGKTITLEVESSDTI.NVKAK.QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV |
Retrocopy | MQIFVKTLTGKTITLEVESSDTIQNVKAKVQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV |
|
Parental | LRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGG |
| LRLRGG...KV.TLTGKEI.IDIE.TDT.DRIKERVEE.EGIPPVQQRLIY.GKQLADDKTA.DY.IE.G |
Retrocopy | LRLRGGLNVKVRTLTGKEIDIDIEMTDTVDRIKERVEEREGIPPVQQRLIYGGKQLADDKTAHDYKIEAG |
|
Parental | SVLHLVLALRGG |
| SVLHLVLALRGG |
Retrocopy | SVLHLVLALRGG |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Oryza sativa japonica was not studied using RNA-Seq expression data.
Oryza sativa japonica was not studied using ChIP-Seq data.
Oryza sativa japonica was not studied using EST data.
Oryza sativa japonica was not studied using FANTOM5 data.
retro_osat_51 was not experimentally validated.
Retrocopy orthology:
Oryza sativa japonica does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.