RetrogeneDB ID:

retro_pabe_1349

Retrocopy
location
Organism:Orangutan (Pongo abelii)
Coordinates:16:35473283..35474087(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:MOCS1
Ensembl ID:ENSPPYG00000016580
Aliases:None
Description:molybdenum cofactor biosynthesis protein 1 [Source:RefSeq peptide;Acc:NP_001126377]


Retrocopy-Parental alignment summary:






>retro_pabe_1349
GCGCGGCCACTGTCCCGGATGCTGCGGCGGCTCCTAAGATCCAACGCCACGGAGCTGCAGCTCAGGGGTTCGGGTGATGC
CGCTCTGCCCCGGCGAGTCCCCGCAAGCTGCCTCAGAGGAGCTGTCCAGGCGGAGGCAGTTCTTGCGGGAGCAGGAGGCC
CCCTTCTCCGCCTTCCTCACAGACAGCTTCGGCCGGCAGCACAGCTACCTGCGGATCTCCCTCCCGGAGAAGTGCAACCT
CAGATGTCAGTACTGCATGCCGGAGGAAGGGGTCCCGCTGACCCCCAAGGCCAACCTGCTGACCACAAAAGAGATTCTGA
CCCTCGCCTGGCTCTTTGTGAAGGAAGGCATCGAAAAGATCCAGCTCACGGGCGGAGAGCCGCTCATCCAGCCGTACGTG
GTGGACATTGTGGCCCAGCTCCACCGACTGGAAGGGCTGAGGACCATCGGTGTCACCACCAATGGCATCAACCTGGCCCG
GCTGCTGCCCCAGCTTCAGAAGGCTGGTCTCAGCGCCATCAACATCAGCCTGGACACACTGGTGCCTGCCAAGTTTGAGT
TCATTGTCCGCAGGAAAGTCTTCCACAAGGTCATGGAGGGCATCCACAAGGCCATCGAGCCAGGCTACAACCCTGTGAAG
GTGAACTGTGTGGTGATGCGAGGCCTTAACGAGGATGAACTCCTGGACTTTGCGGCCTTGACCAAGGGCCTCCCCCTGGA
TGTGCGCTTCATAGAGTACATGCCCTTTGATGGCAACAAGTGGAACTTCAGGAAGATGGTCGCTATAAGGAGATGCTAGA
AACT

ORF - retro_pabe_1349 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 89.63 %
Parental protein coverage: 69.61 %
Number of stop codons detected: 0
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalARPLSRMLWRLLRSSA-RSCSSGAPVTQPCPGESARAASEELSRRRQFLREHAAPFSAFLTDSFGRQHSY
ARPLSRML.RLLRS.A.RSCSSG..V...CPGES..AASEELSRRRQFLRE..APFSAFLTDSFGRQHSY
RetrocopyARPLSRMLRRLLRSNA>RSCSSGVRVMPLCPGESPQAASEELSRRRQFLREQEAPFSAFLTDSFGRQHSY
ParentalLRISLTEKCNLRCQYCMPEEGVPLTPKANLLTTEEILTLARLFVKEGVDKIRLTGGEPLIRPDVVDIVAQ
LRISL.EKCNLRCQYCMPEEGVPLTPKANLLTT.EILTLA.LFVKEG..KI.LTGGEPLI.P.VVDIVAQ
RetrocopyLRISLPEKCNLRCQYCMPEEGVPLTPKANLLTTKEILTLAWLFVKEGIEKIQLTGGEPLIQPYVVDIVAQ
ParentalLQRLEGLRTIGVTTNGINLARLLPQLQKAGLSAINISLDTLVPAKFEFIVRRKGFHKVMEGIHKAIELGY
L.RLEGLRTIGVTTNGINLARLLPQLQKAGLSAINISLDTLVPAKFEFIVRRK.FHKVMEGIHKAIE.GY
RetrocopyLHRLEGLRTIGVTTNGINLARLLPQLQKAGLSAINISLDTLVPAKFEFIVRRKVFHKVMEGIHKAIEPGY
ParentalNPVKVNCVVMRGLNEDELLDFAALTEGLPLDVRFIEYMPFDGNKWNFKKMVS-YKEMLDT
NPVKVNCVVMRGLNEDELLDFAALT.GLPLDVRFIEYMPFDGNKWNF.KMV..YKEML.T
RetrocopyNPVKVNCVVMRGLNEDELLDFAALTKGLPLDVRFIEYMPFDGNKWNFRKMVA<YKEMLET

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .00 RPM 13 .44 RPM
SRP007412_cerebellum 0 .00 RPM 14 .23 RPM
SRP007412_heart 0 .00 RPM 6 .95 RPM
SRP007412_kidney 0 .03 RPM 98 .28 RPM
SRP007412_liver 0 .00 RPM 37 .18 RPM
Pongo abelii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_pabe_1349 retrocopy.
Pongo abelii was not studied using FANTOM5 data.
retro_pabe_1349 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_pabe_1349 has 0 orthologous retrocopies within eutheria group .


Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species Parental gene accession Retrocopies number
Gorilla gorilla ENSGGOG000000089431 retrocopy
Pongo abelii ENSPPYG00000016580 1 retrocopy
retro_pabe_1349 ,



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