RetrogeneDB ID: | retro_pabe_1888 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 22:37409260..37409703(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DNPH1 | ||
Ensembl ID: | ENSPPYG00000016635 | ||
Aliases: | None | ||
Description: | 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 [Source:HGNC Symbol;Acc:21218] |
Percent Identity: | 67.33 % |
Parental protein coverage: | 98.68 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | FCGSIRGGRQDRTLYERIVSRLRRFGTVLTEHVAAAEM-GARGEEAAGGDRLIHEQDLEWLQQADVVVAE |
F.G.I..G..DR.LY..IV.RL.....VLTEH.AA.E..G......AGGDRLIHE..L.WLQ.ADVVVA. | |
Retrocopy | FYGVIH*GQEDRALYRWIVWRLPCLEPVLTEHLAAVEL<GRGVDKSAGGDRLIHEWYLTWLQKADVVVAG |
Parental | VTQPSLGVGYELGRAVAFNKRILCLFRPQSGRVLSAMIRGAADGSRFQVWDYEEGEVEALLDRYFEADPP |
VTQ.SLG.GYELG.A.A.NK.ILCL..PQSGRVLSAMI.GAADGS.FQVWDY.EG.VEALL....EADPP | |
Retrocopy | VTQLSLGIGYELGQATALNK*ILCLLQPQSGRVLSAMIWGAADGSGFQVWDYGEGQVEALLHG*VEADPP |
Parental | GQVAASPDPT |
.QV.ASP.PT | |
Retrocopy | EQV-ASPNPT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .77 RPM | 17 .20 RPM |
SRP007412_cerebellum | 0 .97 RPM | 6 .57 RPM |
SRP007412_heart | 0 .09 RPM | 3 .04 RPM |
SRP007412_kidney | 0 .33 RPM | 74 .22 RPM |
SRP007412_liver | 3 .03 RPM | 33 .94 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000012390 | 1 retrocopy | |
Bos taurus | ENSBTAG00000019913 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000001837 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000005337 | 1 retrocopy | |
Equus caballus | ENSECAG00000006660 | 1 retrocopy | |
Felis catus | ENSFCAG00000009722 | 1 retrocopy | |
Homo sapiens | ENSG00000112667 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000000516 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000016635 | 1 retrocopy |
retro_pabe_1888 ,
|
Pan troglodytes | ENSPTRG00000029662 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000008743 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000018397 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000007022 | 1 retrocopy |