RetrogeneDB ID: | retro_rnor_580 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 1:51736120..51736595(-) | ||
Located in intron of: | ENSRNOG00000013975 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RGD620382 | ||
Ensembl ID: | ENSRNOG00000018397 | ||
Aliases: | Dnph1, C6orf108, RGD620382, Rcl | ||
Description: | Deoxyribonucleoside 5'-monophosphate N-glycosidase [Source:UniProtKB/Swiss-Prot;Acc:O35820] |
Percent Identity: | 81.99 % |
Parental protein coverage: | 97.55 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MAASGEQAPCSVYFCGSIR-GGREDQALYARIVSRLRRYGKVLTEHVADAELEPLGEEAAGGDQFIHEQD |
..ASGEQAP.S.YFC.SI..GG..DQ.LY.RIVSR..RYGKVLTEHV.DAELEP.GEE.AGGDQFI.EQD | |
Retrocopy | VVASGEQAPRSLYFCRSIS<GGQVDQVLYVRIVSRVWRYGKVLTEHVDDAELEPRGEETAGGDQFIQEQD |
Parental | LNWLQQADVVVAEVTQPSLGVGYELGRAVALG-KPILCLFRPQSGRVLSAMIRGAADGSRFQVWDYAEGE |
L.WLQQADVVVAE.TQPSLGVGYELG.AV.LG.KPILCLFRPQSGRVLSAMIRGAAD..RFQVWDYAEGE | |
Retrocopy | LSWLQQADVVVAEGTQPSLGVGYELGGAVTLG<KPILCLFRPQSGRVLSAMIRGAADDWRFQVWDYAEGE |
Parental | VETMLDRYFEAYLPQKTASSS |
V..M.DRY.EAYLPQKTAS.S | |
Retrocopy | VQAMIDRYIEAYLPQKTASFS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 2 .66 RPM |
SRP017611_kidney | 0 .14 RPM | 1 .74 RPM |
SRP017611_liver | 0 .87 RPM | 5 .04 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000012390 | 1 retrocopy | |
Bos taurus | ENSBTAG00000019913 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000001837 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000005337 | 1 retrocopy | |
Equus caballus | ENSECAG00000006660 | 1 retrocopy | |
Felis catus | ENSFCAG00000009722 | 1 retrocopy | |
Homo sapiens | ENSG00000112667 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000000516 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000016635 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000029662 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000008743 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000018397 | 1 retrocopy |
retro_rnor_580 ,
|
Tursiops truncatus | ENSTTRG00000007022 | 1 retrocopy |