RetrogeneDB ID: | retro_pabe_275 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 1:95196508..95196947(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | VHL | ||
Ensembl ID: | ENSPPYG00000013663 | ||
Aliases: | None | ||
Description: | von Hippel-Lindau disease tumor suppressor [Source:RefSeq peptide;Acc:NP_001126390] |
Percent Identity: | 69.8 % |
Parental protein coverage: | 69.01 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | ESGAEESGPEESGPEELGAEEEMEAGRPRPVLRSVNSREPSQVIFCNRSPRVVLPVWLNFDGEPQPYPTL |
..G..E.GPEE...EELG.EEEM.A....PVLRSVNSRE.S..I.CN.SPR.VLPVWLN..GE..PY.TL | |
Retrocopy | KAGTQEAGPEEYCQEELGTEEEMAARAAWPVLRSVNSRELSRIIICNHSPRIVLPVWLNYYGELLPYLTL |
Parental | PPG-TGRRIHSYRGHLWLFRDAGTHDGLLVNQTELFVPSLNVDGQPIFANITL-PVYTLKERCLQVVRSL |
.P.....RIH....H.WLFRDA.THD.LLVNQTELFVPS.NV.GQPIFANITL..VYTLKE.CLQVV.SL | |
Retrocopy | LPA<RDFRIHNF*SHAWLFRDARTHDKLLVNQTELFVPSSNVNGQPIFANITL<AVYTLKEQCLQVVGSL |
Parental | VKPENYRRL |
VKP.NYRRL | |
Retrocopy | VKPKNYRRL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 35 .11 RPM |
SRP007412_cerebellum | 0 .12 RPM | 47 .42 RPM |
SRP007412_heart | 0 .00 RPM | 5 .84 RPM |
SRP007412_kidney | 0 .03 RPM | 17 .47 RPM |
SRP007412_liver | 0 .00 RPM | 9 .64 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Gorilla gorilla | ENSGGOG00000010456 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000007587 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000013663 | 1 retrocopy |
retro_pabe_275 ,
|
Ictidomys tridecemlineatus | ENSSTOG00000013959 | 1 retrocopy |