RetrogeneDB ID: | retro_pabe_3140 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 7:50810806..50811724(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAB3IL1 | ||
Ensembl ID: | ENSPPYG00000003175 | ||
Aliases: | None | ||
Description: | RAB3A interacting protein (rabin3)-like 1 [Source:HGNC Symbol;Acc:9780] |
Percent Identity: | 63.9 % |
Parental protein coverage: | 80.58 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 3 |
Parental | SMEIREKGSEFLKEELHRAQKELKLKDEECERLSKVREQLE-QELEELTASLFEEAHKMVREANMKQAAS |
S..I..KGSE.LKE.LH.A.KEL.LKDE.CE.L..V.EQL..QELEEL.ASLFEEAHKMV.EANM..A.S | |
Retrocopy | SIGIHKKGSELLKEKLHKAHKELQLKDEDCEQLFLVQEQLH<QELEELLASLFEEAHKMVWEANMQ*AVS |
Parental | EKQLK-EARGKIDMLQAEVTA-LKTLVITSTPASPNRELHPQLLSPTKAGPRKGHSRHKSTSSTLCPAVC |
EKQL..EA.GKI.M.QAEVTA.LKTLVI.STPASPN..LH..LLSPTK.G..K.H..HKS.SS.L..A.C | |
Retrocopy | EKQLNAEAWGKIGMVQAEVTA<LKTLVIMSTPASPNYKLHLHLLSPTKNGTCKAHCQHKSPSSALSLALC |
Parental | PAAGHTLTPDREGKEVDTVLFAEFQAWRS-PTLDKTCPFLERVYREDVGPCLDFTMQELSVLVRAAVEDN |
P...H.LT.D...KEVD..L.AEFQAW...PTLDKTC..L..V..ED..PCLDFT.Q.L...V.A.V.D. | |
Retrocopy | PTVRHALTLD---KEVDVTLLAEFQAWKELPTLDKTCSLLQTV*WEDMEPCLDFTVQNLLPQV*ASVGDT |
Parental | TLTIEPVASQTLPAVKVAEVDCSSTNTCALSGLTRTC-RHRIRLGDSKSHYYISPSSRARITAVCNFFTY |
TLTI..VA.Q.LP.V.V..V.C.S.N.C.LS.L..TC..H.I.L.D..SHY.IS.SS.ARITAVCNFF.Y | |
Retrocopy | TLTIKTVALQKLPIVRVTVVNCGSANICVLSNLAHTCHHHHIWLCDFESHYHISLSSQARITAVCNFFIY |
Parental | IRYIQ-QGLVRQDAEPMFWEIMRLRKEMSLAKL |
I.YI..QGLV.QD..P.FWEI..L.KE..LAKL | |
Retrocopy | ICYIH<QGLVQQDLKPVFWEITKL*KEIQLAKL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .06 RPM | 12 .44 RPM |
SRP007412_cerebellum | 0 .00 RPM | 2 .19 RPM |
SRP007412_heart | 0 .00 RPM | 4 .03 RPM |
SRP007412_kidney | 0 .03 RPM | 57 .34 RPM |
SRP007412_liver | 0 .03 RPM | 11 .97 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3716 |
Pan troglodytes | retro_ptro_2518 |
Macaca mulatta | retro_mmul_1698 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Felis catus | ENSFCAG00000007376 | 1 retrocopy | |
Homo sapiens | ENSG00000167994 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000012399 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000015148 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000003273 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000003175 | 1 retrocopy |
retro_pabe_3140 ,
|
Pan troglodytes | ENSPTRG00000003755 | 1 retrocopy |