RetrogeneDB ID: | retro_pabe_857 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 12:67535975..67536514(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPL40 | ||
Ensembl ID: | ENSPPYG00000011578 | ||
Aliases: | None | ||
Description: | mitochondrial ribosomal protein L40 [Source:HGNC Symbol;Acc:14491] |
Percent Identity: | 63.74 % |
Parental protein coverage: | 96.28 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | QIRETHQRASLLSFWELIPMRSEPLRKKKKVDPKKDQEAKERLKRKIRKLEKAAQELIPIEDFITPLKFL |
Q...THQRAS.LS..ELIP.R.EPL...K.V.PK.DQ..K..LK.KI.KLEKA.QELI...DFI....FL | |
Retrocopy | QV*GTHQRASVLSS*ELIPVRAEPLQEQK-VNPKNDQAGKGCLKNKI*KLEKASQELILVADFISLVRFL |
Parental | DKARERPQVELTFEETERRALLLK-KWSLYKQQEHKMERDTIRAMLEAQQEALEELRLESPKLHAEAIKR |
DKA...PQVEL..EE.E.RALLL...WSLYKQ.E..M.RDTI.A.L..QQEAL.EL.LESP....E.IK. | |
Retrocopy | DKASQWPQVELSLEESEWRALLLM<EWSLYKQREYTMDRDTIKAVLGTQQEALQELPLESPEFPTETIKW |
Parental | DPNLFPFEKEGPHYTPPIPNYQPPEGRYNDITKVYTQVEFKR |
D...FPFE.EGP.YT....NYQPP.GRYNDITK.YTQVE.KR | |
Retrocopy | DHSMFPFEWEGPDYTLWVSNYQPPKGRYNDITKMYTQVELKR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .06 RPM | 14 .15 RPM |
SRP007412_cerebellum | 0 .12 RPM | 18 .48 RPM |
SRP007412_heart | 0 .03 RPM | 19 .42 RPM |
SRP007412_kidney | 0 .07 RPM | 29 .40 RPM |
SRP007412_liver | 0 .06 RPM | 41 .56 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1020 |
Gorilla gorilla | retro_ggor_807 |
Callithrix jacchus | retro_cjac_3220 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000001053 | 1 retrocopy | |
Ailuropoda melanoleuca | ENSAMEG00000011421 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000001584 | 1 retrocopy | |
Equus caballus | ENSECAG00000009876 | 1 retrocopy | |
Homo sapiens | ENSG00000185608 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000012336 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000002456 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000016081 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000003865 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000005372 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000011578 | 1 retrocopy |
retro_pabe_857 ,
|
Rattus norvegicus | ENSRNOG00000049686 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000014747 | 1 retrocopy |