RetrogeneDB ID: | retro_pcap_403 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | scaffold_69794:854..1300(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CETN3 | ||
Ensembl ID: | ENSPCAG00000006854 | ||
Aliases: | None | ||
Description: | centrin, EF-hand protein, 3 [Source:HGNC Symbol;Acc:1868] |
Percent Identity: | 75.33 % |
Parental protein coverage: | 89.22 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | MSLALRNDLLVDKTKRKKRRELSEEQKQEIKDAFELFDTDKDEAIDYHELKVAMRALGFDVKKADVLKIL |
MSL.LRN..LVDKTKRK..RELSEEQKQEI.DAF.L.DTDKDE.IDYHELKV..R.L.FDVKK.DV.KIL | |
Retrocopy | MSLSLRNKYLVDKTKRKYQRELSEEQKQEIQDAF*LSDTDKDESIDYHELKVKTRILEFDVKKPDVTKIL |
Parental | KDYDREATGKITFDDFNEVVTDWILERDPHEEILK-AFKLFDDDDSGKISLRNLRRVARELGENMSDEEL |
K.YD.EATGKI.F.DF.EV.TDW.L.RD.HEEILK...KLFD.DDSGKISL.N...VA.ELGE.M.DEEL | |
Retrocopy | KRYDQEATGKIIFEDFHEVITDWMLDRDLHEEILK<GIKLFDKDDSGKISLKNS*HVA*ELGERMNDEEL |
Parental | RAMIEEFDKD |
.A.IEEFDKD | |
Retrocopy | *AIIEEFDKD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dipodomys ordii | ENSDORG00000007233 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000002383 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000002381 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000003203 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000006854 | 1 retrocopy |
retro_pcap_403 ,
|
Procavia capensis | ENSPCAG00000007778 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000017925 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000001992 | 2 retrocopies |