RetrogeneDB ID: | retro_pcap_71 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | GeneScaffold_3917:23843..24854(+) | ||
Located in intron of: | ENSPCAG00000011081 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ECI2 | ||
Ensembl ID: | ENSPCAG00000008568 | ||
Aliases: | None | ||
Description: | enoyl-CoA delta isomerase 2 [Source:HGNC Symbol;Acc:14601] |
Percent Identity: | 97.03 % |
Parental protein coverage: | 85.97 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | QPGLLQVHSFSVLRIHTSQTAMTASQKDFETAVNQMKLLSKDPGNEIKLKLYSLYKQATEGPCNTPKPGM |
...LLQVHSFSVLRIHTSQTAMTASQKDFETAVNQMKLLSKDPGNEIKLKLYSLYKQATEGPCNTPKPGM | |
Retrocopy | ESSLLQVHSFSVLRIHTSQTAMTASQKDFETAVNQMKLLSKDPGNEIKLKLYSLYKQATEGPCNTPKPGM |
Parental | LDFVNKAKWDAWSALGSLPKETAKQNYVELVSSLSSSESPSHGKPVADGQQPAHRDLVVTSEDGITKIVF |
LDFVNKAKWDAWSALGSLPK.TAKQNYVELVSSLSSS.SPSHGKPVADGQQPAHRDLVVTSEDGITKIVF | |
Retrocopy | LDFVNKAKWDAWSALGSLPKKTAKQNYVELVSSLSSSKSPSHGKPVADGQQPAHRDLVVTSEDGITKIVF |
Parental | NRPTRKNAITTEMYEEIMRALEAAGKDDSAITVLTGNGDYYCSGNDLNNFTDIPPGGVEEQAKNSAILLR |
NRPTRKNAITTEMYEEIM.ALEAAGKDDSAITVLTGNGDYYCS.NDLNNFTDIPPGGVEEQAKNSAILLR | |
Retrocopy | NRPTRKNAITTEMYEEIMCALEAAGKDDSAITVLTGNGDYYCSRNDLNNFTDIPPGGVEEQAKNSAILLR |
Parental | NFVGCFIDFPKPLIAVVNGPAVGIAVTLLGLFDVVYATDRATFHTPFSHLGQSPEGCSSYMFPKMMGSAK |
NFVGCFIDFPKPLIAVVN.PAVGIAVTLLGLFDVVYATDRATFHTPFSHLGQSPEGCSSYMFPKMMGSAK | |
Retrocopy | NFVGCFIDFPKPLIAVVNRPAVGIAVTLLGLFDVVYATDRATFHTPFSHLGQSPEGCSSYMFPKMMGSAK |
Parental | AAEILLFGKKLTAREACAQGLVTEVFPDSTFQKEVWTRLKAYSKLPPNAMRISKQLI |
AAEILLFGKKLTAREACAQGL.TEVFPDSTFQK.VWTRLKAYSKLPPNAMRISKQLI | |
Retrocopy | AAEILLFGKKLTAREACAQGLATEVFPDSTFQK*VWTRLKAYSKLPPNAMRISKQLI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000009409 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000009239 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000008568 | 1 retrocopy |
retro_pcap_71 ,
|
Rattus norvegicus | ENSRNOG00000016369 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000015862 | 2 retrocopies |