RetrogeneDB ID: | retro_rnor_1179 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 16:14713927..14714519(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000022621 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Eci2 | ||
Ensembl ID: | ENSRNOG00000016369 | ||
Aliases: | Eci2, Peci | ||
Description: | Enoyl-CoA delta isomerase 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q5XIC0] |
Percent Identity: | 78.5 % |
Parental protein coverage: | 50.64 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | YSSGNDLTNFTSASGGMEEAANKGA-IVLREFVNTFIDFPKPLVAVVNGPAVGISVTLLGLFDAVYASDR |
.SSG.DLTNFTSA.GG.EEA.N.G.....REFVN.FIDFPKPLVAVV..PAVGISVT.L.LFD.VYA.DR | |
Retrocopy | HSSGSDLTNFTSATGGIEEAVNEGV<VEPREFVNSFIDFPKPLVAVVKDPAVGISVTILRLFDTVYALDR |
Parental | ATFHTPFSHLGQSPEACSSYTFPKMMGSAKAAEMLLFGKKLTAREAWAQGLVTEVFPESTFETEVWTRLK |
.TFHTPFSHLGQSPEACSSY.FP.MM.SAKA.EMLLFGK..T.REAWAQ.LVTEVFPESTFETEVWTRLK | |
Retrocopy | TTFHTPFSHLGQSPEACSSYLFPNMMDSAKATEMLLFGKRVTEREAWAQCLVTEVFPESTFETEVWTRLK |
Parental | TYAKLPPNSMRISKELIRKNEKEKLHAV-NEEECTTLRARWLSEECINAIMSFVTRKPKL |
.YAKL..N..RISK.LIRK.EKE.LH...N.EECTTL.ARWLSEE.INAI.SFV.RKPKL | |
Retrocopy | AYAKLLSNARRISKGLIRKIEKENLHTI<NAEECTTL*ARWLSEERINAILSFVSRKPKL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 17 .18 RPM |
SRP017611_kidney | 0 .00 RPM | 85 .27 RPM |
SRP017611_liver | 0 .00 RPM | 111 .14 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000009409 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000009239 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000008568 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000016369 | 1 retrocopy |
retro_rnor_1179 ,
|
Tupaia belangeri | ENSTBEG00000015862 | 2 retrocopies |