RetrogeneDB ID: | retro_ptro_1347 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 19:9529131..9529545(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBXN2A | ||
Ensembl ID: | ENSPTRG00000011705 | ||
Aliases: | UBXN2A, UBXD4 | ||
Description: | None |
Percent Identity: | 74.29 % |
Parental protein coverage: | 54.05 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | SNCEYFVDSLFEEAQKVSSKCVSPAEQKKQVDVNIKLWKNGFTVNNDFRSYSDGASQQFLNSIKKGELPS |
.N.E.FVDSLFEEAQKV.SKC.SP..Q.KQVDVNIKLWKNGFTVNN.FRSYS.GASQQFLNSIKKGELPS | |
Retrocopy | TNYE*FVDSLFEEAQKVGSKCLSPT*QNKQVDVNIKLWKNGFTVNNYFRSYSNGASQQFLNSIKKGELPS |
Parental | ELQGIFDKEEVDVKVEDKKNEICLSTKPVFQPFSGQGHRLGSATPKIVSKAKNIEIENKNNLSAVPLNNL |
ELQGIFDKEEV.VKVEDKKNEIC.STKPVFQ.FSGQGH..G.....I.....N.....K...S.VP.N.L | |
Retrocopy | ELQGIFDKEEVGVKVEDKKNEICMSTKPVFQLFSGQGHQVGRVS-HIKDFIENYQGSQKKS-SPVPGNSL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .11 RPM | 1 .64 RPM |
SRP007412_cerebellum | 0 .29 RPM | 3 .48 RPM |
SRP007412_heart | 0 .09 RPM | 6 .09 RPM |
SRP007412_kidney | 0 .13 RPM | 3 .69 RPM |
SRP007412_liver | 0 .10 RPM | 2 .42 RPM |
SRP007412_testis | 0 .63 RPM | 3 .16 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2025 |