RetrogeneDB ID: | retro_ptro_2745 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 8:45154586..45155682(-) | ||
Located in intron of: | ENSPTRG00000020227 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NSFL1C | ||
Ensembl ID: | ENSPTRG00000013164 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 85.29 % |
Parental protein coverage: | 98.92 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | AAERQEALREFVAVTGAEEDRARFFLESAGWDLQIALASFYEDGGDEDIVTISQATPSSVSRGTAPSDNR |
AAE.Q..LREFV.V.G.E.DRA.FFL.SA.WDLQIALASFYED.G.EDI.TISQATPSSVSRGTAPSDNR | |
Retrocopy | AAEQQKSLREFVGVMGTEQDRACFFLKSATWDLQIALASFYEDRG-EDIITISQATPSSVSRGTAPSDNR |
Parental | VTSFRDLIHDQDEDEEEEEGQRFYAGGSERSGQQIVGPPRKKSPNELVDDLFKGAKEHGAVAVERVTKSP |
VTSFRDL.HDQDEDEEEEEGQRFYAG.SERSGQQIVGPPRKKS.NELVDDLFKGAKEHGAVAVERVT..P | |
Retrocopy | VTSFRDLTHDQDEDEEEEEGQRFYAGASERSGQQIVGPPRKKSSNELVDDLFKGAKEHGAVAVERVTNRP |
Parental | GETSKPRPFAGGGYRLGAAPEEESAYVAGEKRQHSSQDVHVVLKLWKSGFSLDNGELRSYQDPSNAQFLE |
GETS.PRPFAG.GY.LGAAPEEESAYVAGEKR.HSSQDVHVVLKL.KSGFSLDNGELRSY.DPS.AQFLE | |
Retrocopy | GETSTPRPFAGDGYGLGAAPEEESAYVAGEKRHHSSQDVHVVLKLCKSGFSLDNGELRSY*DPSDAQFLE |
Parental | SIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKA-FTGEGQKLGSTAPQVLSTSSPAQQAENE |
SI.R.EVPAEL.RLAH.GQ.NLDMEDH.DEDF.K.K.AFKA.FTG.GQ...STAP.VLST.SP.Q.AENE | |
Retrocopy | SIHRREVPAELWRLAHSGQANLDMEDHQDEDFMKSK*AFKA>FTGDGQTPSSTAP*VLSTISPVQLAENE |
Parental | AKASSSILIDESEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFILMTTFPNKELAD |
.KA.SSILI..SE.TTNIQIRLADGGRLVQKFNHSHRIS.I.LFIVDA.PAMAATSFILMTTFPNKELAD | |
Retrocopy | VKANSSILIVKSETTTNIQIRLADGGRLVQKFNHSHRISNIQLFIVDAQPAMAATSFILMTTFPNKELAD |
Parental | ESQTLKEANLLNAVIVQ |
ES.TLKEANLLNA.I.Q | |
Retrocopy | ESWTLKEANLLNAAIMQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .07 RPM | 67 .92 RPM |
SRP007412_cerebellum | 0 .11 RPM | 64 .89 RPM |
SRP007412_heart | 0 .44 RPM | 45 .29 RPM |
SRP007412_kidney | 1 .49 RPM | 52 .51 RPM |
SRP007412_liver | 0 .69 RPM | 84 .29 RPM |
SRP007412_testis | 0 .11 RPM | 55 .43 RPM |
Species | RetrogeneDB ID |
---|---|
Gorilla gorilla | retro_ggor_2718 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000088833 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000013539 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000003940 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000015994 | 1 retrocopy | |
Mus musculus | ENSMUSG00000027455 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000009341 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000002630 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000010851 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000011705 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000013164 | 1 retrocopy |
retro_ptro_2745 ,
|
Pan troglodytes | ENSPTRG00000033886 | 1 retrocopy |