>retro_ptro_1827
GTGGCTTGTGTTTTCTGTCGCAAAAAGGATGACTGTCCTAATAAATATGGAGAAAAGAAAACTAAGGAGAAATGGAATCT
CACTGTACATTATTATTCTTTGTTGATGTCAAGTGGAATTTGGCAGAGAGGTAAAGAAGGAGTTTATGGTTTTCTATTAG
AAGATACCAGGAAGGAAGTGAATAGAGCTTCTAAACTGAAATGCTGTCTTTGCAAGAAAAATGGTGCTTCAGTTGGATGT
GTTGCACCCTAATGTAAATGAAGTTATTTCCCATGTGGACTTCAGAGAGAATGTATTTTCCAGTTTATTGGCAATTTCAC
ATCATTTTGTTGGAACCATCGACCTGTTCAAATAATTACATCTAATAATTATAGAGACTCCTTACCATGCACCATTTGCT
CGGAATTTATTGAGCCTATTCTAAGTTATAACATATTACAAAGTGCTTGTTGTAAGAACGCTTGGTTTCATAGAGACTGT
TTACAGGTTCAAGCAATAAATGCAGGAGTGTTTTTCTTTAGGTGTACAATATGCAATAATAGTGACATCTTTCAGAAAGA
GATGTTGAGAATGGGAATTCATATTCCTGAAAAAGATGCATCCTGGGAATTAGAGGAAAATGCTTATCAAGAGCTTCTGC
AGCACTATGAGCATTGTGATGTTCAAAAATGTCATTGCAAAGAAGGGTGAGACTATAATGCACCTGATAGCAAATGGGAA
ATAAAGCGCTGTCAGTGTTGTGGTTCCAGTGACACACACTTAGCCTGCTCTTCACTACGGTCATGGGAACAAAATTGGGA
GTTTTGGGAATGTAGGGGTATTATCTACAGTTCAGGAGTGTTCCAGAAAGCCAAAAACATGTATTATCCAACTCTAATAA
TGTGGGGATTACAGATTGTTGGAAGAGTCATCACCTAAATTACCCAGACAGTCACCTGTATTCCAGAGTAAAGATCTACT
GAGGCAAGGCAGCAAATTTAGAAGGAATGTATCAACACTATTAATGAGTTAGGATTCCAAATTTAAAAAAAAACTACAAG
ATTATGTATCAACAAAGCCAATATCTGAAATCGTGCCTTAGATGGATTCAGAAATCAAAACTTTAATCCTTCATATGCAA
TTGAAGTAGCATATGTTATTGAAAATGATAATTTTGGAAGTGGACATCCTGGATCAAAGCAAGAATTTCTGAGTGTCTTA
ATGCAACATCTTGAGAACTCATCATTGTTTGAGGGGTCCTTGTCAAAGAACTTATCTCTAAATTCTCAAGCTCTGAAAGG
GAATCTTTACTATGAAGCTGGCAAAATGCTTGCCATTTATTTAGTTCACGGTGGTCCTTCACCTGGTTTCTTTTCTAAAA
CCTTGTTTAACTGCCTTGTTTATGGACCAAAAAATACCCAGCCAATTTTAGATGATGTTTCAGACTTTGATGTGGCACAG
ATTATAATCAGGATAAATACTGCAACAACA
ORF - retro_ptro_1827 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
88.55 % |
Parental protein coverage: |
70.11 % |
Number of stop codons detected: |
4 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | LACVFCRKNDDCPNKYGEKKTKEKWNLTVHYYCLLMSSGIWQRGKEEEGVYGFLIEDIRKEVNRASKLKC |
| .ACVFCRK.DDCPNKYGEKKTKEKWNLTVHYY.LLMSSGIWQRGKE..GVYGFL.ED.RKEVNRASKLKC |
Retrocopy | VACVFCRKKDDCPNKYGEKKTKEKWNLTVHYYSLLMSSGIWQRGKE--GVYGFLLEDTRKEVNRASKLKC |
|
Parental | CVCKKNGASIGCVAPRCKRSYHFPCGLQRECIFQFTGNFASFCWDHRPVQIITSNNYRESLPCTICLEFI |
| C.CKKNGAS.GCVAP.CK.SY.FPCGLQRECIFQF.GNF.SFCW.HRPVQIITSNNYR.SLPCTIC.EFI |
Retrocopy | CLCKKNGASVGCVAP*CK*SY-FPCGLQRECIFQFIGNFTSFCWNHRPVQIITSNNYRDSLPCTICSEFI |
|
Parental | EPIPSYNVLRSPCCKNAWFHRDCLQVQAINAGVFFFRCTICNNSDIFQKEMLRMGIHIPEKDASWELEEN |
| EPI.SYN.L.S.CCKNAWFHRDCLQVQAINAGVFFFRCTICNNSDIFQKEMLRMGIHIPEKDASWELEEN |
Retrocopy | EPILSYNILQSACCKNAWFHRDCLQVQAINAGVFFFRCTICNNSDIFQKEMLRMGIHIPEKDASWELEEN |
|
Parental | AYQELLQHYERCDVRRCRCKEGRDYNAPDSKWEIKRCHCCGSSGTHLACSSLRSWEQNWECLECRGIIYN |
| AYQELLQHYE.CDV..C.CKEG.DYNAPDSKWEIKRC.CCGSS.THLACSSLRSWEQNWE..ECRGIIY. |
Retrocopy | AYQELLQHYEHCDVQKCHCKEG*DYNAPDSKWEIKRCQCCGSSDTHLACSSLRSWEQNWEFWECRGIIYS |
|
Parental | SGEFQKAK-KHVLPNSNNVGITDC-LLEESSPKLPRQSPGSQSKDLLRQGSKFRRNVSTLLI-ELGFQIK |
| SG.FQKAK.KHVL.NSNNVGITDC.L.E.S.PKLPRQSP..QSKDLLRQGSKFRRNVSTLL..ELGFQI. |
Retrocopy | SGVFQKAK<KHVLSNSNNVGITDC<LEESS-PKLPRQSPVFQSKDLLRQGSKFRRNVSTLLM<ELGFQIX |
|
Parental | KKTKRLYINKANIWNSALDAFRNRNFNPSYAIEVAYVIENDNFGSEHPGSKQEFLSLLMQHLENSSLFEG |
| ....RL.INKANI.N.ALD.FRN.NFNPSYAIEVAYVIENDNFGS.HPGSKQEFLS.LMQHLENSSLFEG |
Retrocopy | XXXTRLCINKANI*NRALDGFRNQNFNPSYAIEVAYVIENDNFGSGHPGSKQEFLSVLMQHLENSSLFEG |
|
Parental | SLSKNLSLNSQALKENLYYEAGKMLAISLVHGGPSPGFFSKTLFNCLVYGPENTQPILDDVSDFDVAQII |
| SLSKNLSLNSQALK.NLYYEAGKMLAI.LVHGGPSPGFFSKTLFNCLVYGP.NTQPILDDVSDFDVAQII |
Retrocopy | SLSKNLSLNSQALKGNLYYEAGKMLAIYLVHGGPSPGFFSKTLFNCLVYGPKNTQPILDDVSDFDVAQII |
|
Parental | IRINTATT |
| IRINTATT |
Retrocopy | IRINTATT |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain_prefrontal_cortex |
0 .00 RPM |
6 .92 RPM |
SRP007412_cerebellum |
0 .00 RPM |
12 .87 RPM |
SRP007412_heart |
0 .00 RPM |
4 .37 RPM |
SRP007412_kidney |
0 .03 RPM |
7 .22 RPM |
SRP007412_liver |
0 .00 RPM |
3 .14 RPM |
SRP007412_testis |
0 .00 RPM |
114 .87 RPM |
Pan troglodytes was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ptro_1827 retrocopy.
Pan troglodytes was not studied using FANTOM5 data.
retro_ptro_1827 was not experimentally validated.
Retrocopy orthology:
Retrocopy
retro_ptro_1827 has 1 orthologous retrocopies within
eutheria group
.
Parental genes homology:
Parental genes homology involve
4 parental genes, and
4 retrocopies.