RetrogeneDB ID: | retro_ptro_2521 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 7:38436398..38436705(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | VMA21 | ||
Ensembl ID: | ENSPTRG00000022372 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 75.73 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MERPDKAALNALQPPEFRNESSLASTLKTLLFFTALMITVPIGLY-FTTKSYIFEG-ALGMSNRDSYFYA |
.ERPDK.ALNALQPP.F..ESSLASTLKTLLFFTALMITVPIGL....T......G.ALGMSN.DS.FYA | |
Retrocopy | VERPDKVALNALQPPKFGKESSLASTLKTLLFFTALMITVPIGLF>YFTTKSYISGGALGMSNKDSCFYA |
Parental | AIVAVVAVHVVLALFVYVAWNEGSRQWREGKQD |
AIVAVV..HVVLALF.YV.WNEGS.Q..EGKQD | |
Retrocopy | AIVAVVTGHVVLALFMYVVWNEGS*Q*HEGKQD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 3 .16 RPM |
SRP007412_cerebellum | 0 .00 RPM | 4 .37 RPM |
SRP007412_heart | 0 .00 RPM | 1 .87 RPM |
SRP007412_kidney | 0 .00 RPM | 3 .43 RPM |
SRP007412_liver | 0 .00 RPM | 1 .37 RPM |
SRP007412_testis | 0 .00 RPM | 1 .48 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000003916 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000008426 | 1 retrocopy | |
Mus musculus | ENSMUSG00000073131 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000022372 | 1 retrocopy |
retro_ptro_2521 ,
|
Rattus norvegicus | ENSRNOG00000049744 | 1 retrocopy |