RetrogeneDB ID: | retro_rnor_2843 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | X:107517143..107517438(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSRNOG00000049744 | ||
Aliases: | None | ||
Description: | Protein Vma21; Similar to 2610030H06Rik protein (Predicted), isoform CRA_b [Source:UniProtKB/TrEMBL;Acc:D3ZM03] |
Percent Identity: | 69.61 % |
Parental protein coverage: | 99.01 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | ERLDKAALNALQPPEFRNENSLA-ATLKTLLFFTALMIT-VPIGLYFTTKSYIFEGALGMSNRDSYFYAA |
E.LDKAA...LQPPEFRNE.SL........L.F.......VPI.LYFTTKSYI.EGA.GMSNRDSYFYAA | |
Retrocopy | ELLDKAAPIPLQPPEFRNETSLSFSSILKTLLFITALRS>VPI*LYFTTKSYICEGASGMSNRDSYFYAA |
Parental | IVAVVAVHVVLALFVYVAWNEGSRQWREGKQD |
I.AV...HVVLAL.VYVAWNEGS.QW.EGKQD | |
Retrocopy | IIAV---HVVLALLVYVAWNEGS*QWHEGKQD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .00 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .00 RPM |
SRP017611_liver | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000006296 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000003916 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000008426 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000006467 | 1 retrocopy | |
Homo sapiens | ENSG00000160131 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000009034 | 1 retrocopy | |
Mus musculus | ENSMUSG00000073131 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000013711 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000015201 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000020820 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000022372 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000049744 | 1 retrocopy |
retro_rnor_2843 ,
|
Ictidomys tridecemlineatus | ENSSTOG00000011179 | 1 retrocopy |