RetrogeneDB ID: | retro_ptro_2597 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 7:6521091..6521792(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CCNB2 | ||
Ensembl ID: | ENSPTRG00000007123 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 81.7 % |
Parental protein coverage: | 58.79 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | TGVNSKVKSHVTIRRTVLEEIGNRVTTRAAQVAKKAQKTKVPVQPTKTTNVSKQLKPTASVK-PVQMEKL |
TGVNSK.KSHVTIR...LE.IGNRV..RAAQVAKKAQ.TKVPVQP..TTNV.KQLKPTASVK..VQME.L | |
Retrocopy | TGVNSKPKSHVTIRHSILE*IGNRVIARAAQVAKKAQNTKVPVQPRETTNVNKQLKPTASVK<MVQMEML |
Parental | APKGPSPTPEDVSMKEENLCQAFSDALLCKIEDIDNEDWENPQLCSDYVKDIYQYLRQLEVLQSVNPHFL |
APKGPSP.PED.SMKEEN.CQAFSDALL.KIEDID..DW.NPQLCSDYVKDIYQYLRQLE.LQ..NPH.L | |
Retrocopy | APKGPSPIPEDASMKEENICQAFSDALLYKIEDIDDKDWNNPQLCSDYVKDIYQYLRQLEILQFINPHVL |
Parental | DGRDINGRMRAILVDWLVQVHSKFRLLQETLYMCVGIMDRFLQVQPVSRKKLQLVGITALLLASKYEEMF |
DG.D.NG....ILVDWLVQ.HSK.RLLQETLY.C..IMD.FL.VQPVS..KLQLV.ITALLLASKYEEMF | |
Retrocopy | DG*DVNGHKHPILVDWLVQIHSKLRLLQETLYVCIAIMD*FLLVQPVSQRKLQLVWITALLLASKYEEMF |
Parental | SPNIEDFVYITDNAYTSSQIREMET |
SPNIE.FVYITDNAYTSSQI.EMET | |
Retrocopy | SPNIEGFVYITDNAYTSSQIQEMET |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 0 .45 RPM |
SRP007412_cerebellum | 0 .00 RPM | 1 .58 RPM |
SRP007412_heart | 0 .00 RPM | 0 .70 RPM |
SRP007412_kidney | 0 .08 RPM | 0 .89 RPM |
SRP007412_liver | 0 .00 RPM | 3 .63 RPM |
SRP007412_testis | 0 .11 RPM | 223 .10 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3816 |
Pongo abelii | retro_pabe_3074 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000005269 | 1 retrocopy | |
Homo sapiens | ENSG00000157456 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000011543 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000012885 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000006517 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000007123 | 1 retrocopy |
retro_ptro_2597 ,
|
Ictidomys tridecemlineatus | ENSSTOG00000001275 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000013818 | 1 retrocopy |