RetrogeneDB ID: | retro_ptro_964 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 14:37969832..37970129(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RIPPLY3 | ||
Ensembl ID: | ENSPTRG00000013896 | ||
Aliases: | None | ||
Description: | ripply3 homolog (zebrafish) [Source:HGNC Symbol;Acc:3047] |
Percent Identity: | 59.6 % |
Parental protein coverage: | 52.38 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | PPPPRGPESPAPWRPWIQTPGDAELTRTGRPLEPRADQHTFGSKGAFGFQHPVRVYLPMSKRQEYLRSSG |
P..P....S...WRP.I.TP.DAELTRTG....P..DQ.TFG.K..F.FQHPVR.YLP..K.QEYL..SG | |
Retrocopy | PWGPSPAWSLTAWRPVILTPADAELTRTGSQFKPGGDQETFGLKEVFRFQHPVRLYLPFLKCQEYLQCSG |
Parental | EQVLASFPVQATIDFYDDESTESASEAEE |
E.VL.SFPVQA.I.FY.DES.....E.EE | |
Retrocopy | EKVLVSFPVQAMIYFYNDESDSDDEEQEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 0 .20 RPM |
SRP007412_cerebellum | 0 .00 RPM | 1 .83 RPM |
SRP007412_heart | 0 .03 RPM | 0 .06 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .44 RPM |
SRP007412_liver | 0 .00 RPM | 0 .36 RPM |
SRP007412_testis | 0 .00 RPM | 0 .00 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1407 |
Gorilla gorilla | retro_ggor_1091 |
Pongo abelii | retro_pabe_1163 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000036019 | 1 retrocopy | |
Homo sapiens | ENSG00000183145 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000006091 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000004521 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000011408 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000013896 | 1 retrocopy |
retro_ptro_964 ,
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