RetrogeneDB ID: | retro_pvam_1022 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | scaffold_2305:120932..121378(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NOL12 | ||
Ensembl ID: | ENSPVAG00000010097 | ||
Aliases: | None | ||
Description: | nucleolar protein 12 [Source:HGNC Symbol;Acc:28585] |
Percent Identity: | 52.6 % |
Parental protein coverage: | 70.09 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | HQEYLKMLAEREEALEE-ADELDRLVTAKTESVQYDHPNHTVTVT-TISDLDLSGARLLGLLPPEQEAGY |
....LKMLAEREE.LE..ADELD.LVT..TE.VQYDH...TVT...T.S.L.LSGA.LLGL..PE...G. | |
Retrocopy | YSAHLKMLAEREEVLEA<ADELDWLVTGQTEWVQYDHSSLTVTTS<TSSSLELSGAWLLGLPLPEKAVGH |
Parental | GSEEEASSMEKPTKALPRKSRDPLLSQRISSLTAS-LHAHSRKKVKRKHPRHAQDSTKKPPSATR-TSKT |
.S.......E.P.K.LPRKSRD........SL.....H..SRKKVK.KHP....D.TKKP.S..R.T.K. | |
Retrocopy | LSRR--CHPERPRKVLPRKSRDSCYPNGYFSLLHKHRHPRSRKKVKKKHPERSRDFTKKPLSVIR>TNKI |
Parental | QRRRLTGKSQHNRE |
Q..R.T.K..H.R. | |
Retrocopy | QCCRMTAKARHRRQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000010139 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000012487 | 1 retrocopy | |
Equus caballus | ENSECAG00000011050 | 1 retrocopy | |
Felis catus | ENSFCAG00000004273 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000017013 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000008255 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000010097 | 1 retrocopy |
retro_pvam_1022 ,
|
Tupaia belangeri | ENSTBEG00000009745 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000004799 | 1 retrocopy |