RetrogeneDB ID: | retro_pvam_184 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | GeneScaffold_1767:13563..14207(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MEMO1 | ||
Ensembl ID: | ENSPVAG00000011427 | ||
Aliases: | None | ||
Description: | mediator of cell motility 1 [Source:HGNC Symbol;Acc:14014] |
Percent Identity: | 88.43 % |
Parental protein coverage: | 88.48 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | LGPSHHVPLSRCALSSVDIYRTPLYDLRIDQKIYGELWKTGMFERMSLQTDEDEHSIEMHLPYTAKAMES |
LGPSHHV.LS.CALS.VDIYRTPLYDL..DQ.IY.ELWKTGMFE.MSLQTDED.HSIEMHLPYTAKAMES | |
Retrocopy | LGPSHHVHLSPCALSRVDIYRTPLYDLGFDQEIYRELWKTGMFECMSLQTDEDQHSIEMHLPYTAKAMES |
Parental | HKDEFTIIPVLVGALSESKEQEFGKLFSKYLADPSNLFVVSSDFCHWGQRFRYSYYDESQGEIYRSIEHL |
HKDEFTII..L.GAL.ESKEQEF.KLFSKYLADPSNLFVVSSDF.H.GQRF.YSYYDESQGEIYRSIEHL | |
Retrocopy | HKDEFTIILILGGALNESKEQEFRKLFSKYLADPSNLFVVSSDFWH*GQRFYYSYYDESQGEIYRSIEHL |
Parental | DKMGMSIIEQLDPVSFSNYLKKYHNTICGRHPIG-VLLNAITELQKNGMNMSFSFLNYAQSSQCRNWQDS |
DK.GM.IIEQLDPVSFSNYLKKYHN.ICGRHPI..VLLNAITELQKNGMNMSFSFLNY.Q..QCRNWQDS | |
Retrocopy | DKIGMNIIEQLDPVSFSNYLKKYHNAICGRHPIE<VLLNAITELQKNGMNMSFSFLNYSQLRQCRNWQDS |
Parental | SVSYAA |
SVSYAA | |
Retrocopy | SVSYAA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000012339 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000012278 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000001254 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000005878 | 3 retrocopies | |
Pteropus vampyrus | ENSPVAG00000011427 | 1 retrocopy |
retro_pvam_184 ,
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