Parental gene: | ENSOCUG00000005878 |
| Aliases: | None |
| Description: | None |
| Organism: | Rabbit (Oryctolagus cuniculus) |
| Coordinates: | 2:154325422..154400607(+) |
>ENSOCUG00000005878
GGACCGCAGCTGAATGCCCAGCTAGAAGGTTGGCTTTCACAAGTACAGTCTACAAAAAAGCCTGCTAGAGCCATTATTGC
ACCCCATGCAGGATATACGTACTGTGGGTCTTGTGCTGCCCATGCTTACAAACAAGTGGATCCATCTATAACCCGGAGAA
TTTTCATCCTTGGACCTTCTCATCACGTGCCCCTCTCTCGATGTGCACTTTCCAGTGTGGATATATATAGGACGCCTCTG
TATGACCTTCGTATTGACCAAAAGATTTACGGAGAACTGTGGAAGACAGGAATGTTTGAACGCATGTCTCTACAAACAGA
TGAAGATGAACACAGTATTGAAATGCACTTGCCTTATACAGCTAAAGCCATGGAAAGCCATAAGGATGAGTTTACCATTA
TTCCTGTACTGGTTGGAGCTCTGAGTGAGTCAAAAGAACAGGAATTCGGAAAACTCTTCAGTAAATATCTAGCGGATCCT
AGTAATCTCTTTGTGGTTTCTTCTGATTTCTGCCATTGGGGTCAGAGGTTCCGTTACAGTTACTATGATGAATCCCAGGG
GGAGATTTATAGATCCATTGAACATCTAGATAAAATGGGTATGAGTATTATAGAGCAATTAGACCCTGTATCTTTTAGCA
ATTACTTGAAGAAGTACCATAATACTATATGTGGAAGACATCCCATAGGGGTGTTACTAAATGCTATCACAGAGCTCCAG
AAGAATGGAATGAATATGAGCTTTTCCTTTTTGAATTATGCCCAGTCAAGCCAGTGCAGAAACTGGCAAGACAGTTCAGT
GAGTTATGCAGCTGGAGCCCTCACGGTCCAC
GGACCGCAGCTGAATGCCCAGCTAGAAGGTTGGCTTTCACAAGTACAGTCTACAAAAAAGCCTGCTAGAGCCATTATTGC
ACCCCATGCAGGATATACGTACTGTGGGTCTTGTGCTGCCCATGCTTACAAACAAGTGGATCCATCTATAACCCGGAGAA
TTTTCATCCTTGGACCTTCTCATCACGTGCCCCTCTCTCGATGTGCACTTTCCAGTGTGGATATATATAGGACGCCTCTG
TATGACCTTCGTATTGACCAAAAGATTTACGGAGAACTGTGGAAGACAGGAATGTTTGAACGCATGTCTCTACAAACAGA
TGAAGATGAACACAGTATTGAAATGCACTTGCCTTATACAGCTAAAGCCATGGAAAGCCATAAGGATGAGTTTACCATTA
TTCCTGTACTGGTTGGAGCTCTGAGTGAGTCAAAAGAACAGGAATTCGGAAAACTCTTCAGTAAATATCTAGCGGATCCT
AGTAATCTCTTTGTGGTTTCTTCTGATTTCTGCCATTGGGGTCAGAGGTTCCGTTACAGTTACTATGATGAATCCCAGGG
GGAGATTTATAGATCCATTGAACATCTAGATAAAATGGGTATGAGTATTATAGAGCAATTAGACCCTGTATCTTTTAGCA
ATTACTTGAAGAAGTACCATAATACTATATGTGGAAGACATCCCATAGGGGTGTTACTAAATGCTATCACAGAGCTCCAG
AAGAATGGAATGAATATGAGCTTTTCCTTTTTGAATTATGCCCAGTCAAGCCAGTGCAGAAACTGGCAAGACAGTTCAGT
GAGTTATGCAGCTGGAGCCCTCACGGTCCAC
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 4 .62 RPM |
| SRP017611_kidney | 10 .95 RPM |
| SRP017611_brain | 8 .77 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000007771 | possible_ortholog | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000012339 | ortholog_one2many | 2 retrogenes | |
| Cavia porcellus | ENSCPOG00000012278 | ortholog_one2many | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000001254 | ortholog_one2many | 1 retrogene | |
| Equus caballus | ENSECAG00000019946 | possible_ortholog | 1 retrogene | |
| Echinops telfairi | ENSETEG00000007994 | possible_ortholog | 1 retrogene | |
| Felis catus | ENSFCAG00000001385 | possible_ortholog | 1 retrogene | |
| Homo sapiens | ENSG00000162959 | possible_ortholog | 2 retrogenes | |
| Macropus eugenii | ENSMEUG00000010461 | possible_ortholog | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000016108 | possible_ortholog | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000005208 | possible_ortholog | 1 retrogene | |
| Mus musculus | ENSMUSG00000058704 | possible_ortholog | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000015577 | possible_ortholog | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000010975 | possible_ortholog | 3 retrogenes | |
| Pongo abelii | ENSPPYG00000012511 | possible_ortholog | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000011427 | ortholog_one2many | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000002828 | possible_ortholog | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ocun_928 | 70.18 | 76.53 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ocun_1441 | 82.14 | 50.18 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ocun_1663 | 98.76 | 87.36 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSOCUG00000005878 retrocopies