RetrogeneDB ID: | retro_pvam_3 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | scaffold_613:57533..59558(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSPVAG00000006721 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KIF2C | ||
Ensembl ID: | ENSPVAG00000009856 | ||
Aliases: | None | ||
Description: | kinesin family member 2C [Source:HGNC Symbol;Acc:6393] |
Percent Identity: | 59.04 % |
Parental protein coverage: | 63.52 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | ELPASANSRKQFSV-PAGPARPSCPAVAEIPLTMVSEEVEEQVHSIRGSSSANPVNSVRRKSCIVKEMEK |
E.P....S....SV.P....R..C.A...I.......E......S........P......KS....E.EK | |
Retrocopy | EHPKPSRSLASLSVAPSSTIRNRCMATSWIATIPQKNETPSE-ESLTVKVPSRPCLMKQKKSPCLREIEK |
Parental | MKNKREEKRAQNSEMRIKRAQEYDNSFPNWEFARMIKEFRATLDCHPLTMTDPIEEHRICVCVRKRPLNK |
....RE..R....E.R..RA.......PN.E..RMI.E.R..LD........P.E..RI.VCVRKRPLN. | |
Retrocopy | LQKQREKRRRLQLEIRAQRALNVHTGNPNYEIMRMIDEYRRQLDSSKMSSLEPREDRRIYVCVRKRPLNQ |
Parental | QELTKKEIDVISVPSKCLLFVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVHTIFQGG |
QE.T.K..D.I..PS.....VHE.K.KVDLT.YLENQ.FCFD.AFD.TASNE.VY.FTA.PLV..IF..G | |
Retrocopy | QETTMKDLDIITIPSHNVVMVHESKQKVDLTRYLENQTFCFDHAFDDTASNELVYQFTAQPLVESIFRKG |
Parental | KATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLLKNQPRYRNLGLEVYVTFFEIYNGKLF |
.ATCFAYGQTGSGKTHTMGG..SG..Q..SKGIY.....DVFLL.....Y..L.L.VY.TFFEIY.GK.. | |
Retrocopy | MATCFAYGQTGSGKTHTMGGAFSGRDQDCSKGIYSLVAQDVFLLLKTSVYKKLDLKVYGTFFEIYGGKVY |
Parental | DLLNKKAKLRVLEDGKQQVQVVGLQEHLVTCADDVIKMIDIGSACRTSGQTFANSNSSRSHACFQILLRA |
DLLN.K.KL.VLEDG.QQ.QVVGLQE..V.C..DV......G..CRTSGQT..N..SSRSHA.FQI.L.. | |
Retrocopy | DLLNWKKKLQVLEDGNQQIQVVGLQEQEVCCVEDVLNLVELGNSCRTSGQTSVNAHSSRSHAVFQIILKS |
Parental | KGRVHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRD |
.G..HGKFSLVDLAGNERGADT....RQ...EGAEINKSLLALKECIRALGQNK.HTPFR.SKLTQVLRD | |
Retrocopy | RGKLHGKFSLVDLAGNERGADTAKVNRQRQLEGAEINKSLLALKECIRALGQNKSHTPFRASKLTQVLRD |
Parental | SFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELS |
SFIG.NS.TCMIA.ISPG..SCE.TLNTLRYA.RVKEL. | |
Retrocopy | SFIGQNSFTCMIATISPGMASCENTLNTLRYANRVKELT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Mus musculus | ENSMUSG00000028678 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000006916 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000001427 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000009856 | 1 retrocopy |
retro_pvam_3 ,
|
Pteropus vampyrus | ENSPVAG00000017206 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000003931 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000000748 | 1 retrocopy | |
Drosophila melanogaster | FBgn0030268 | 2 retrocopies |