RetrogeneDB ID:

retro_pvam_3

Retrocopy
location
Organism:Megabat (Pteropus vampyrus)
Coordinates:scaffold_613:57533..59558(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSPVAG00000006721
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:KIF2C
Ensembl ID:ENSPVAG00000009856
Aliases:None
Description:kinesin family member 2C [Source:HGNC Symbol;Acc:6393]


Retrocopy-Parental alignment summary:






>retro_pvam_3
ATGGCCAGCCAGTTATGCCTCCCTGTCGCCCCGAGCCTCTCGTCCTTGAAAACCGTGAAGCCCCACTTCCGAGACATCCA
AGTGGGCATCTGCGTGGCGATCCAGCGCAGCGACGGGCGGATCCACCTTGCTCTGATCACAGAGTTCAAAAGAGAAAACT
CTTGCGTCACGGTGGAGTGGGTCGAAAAAGGAGTGAAAAAGGGCAAAAAAATTGATCTAGAGACTATATTCCTTCTGAAT
CCAGCACTAGCCTCTGCTGAACACCCCAAACCATCCAGATCATTGGCTTCCTTGTCTGTAGCGCCCTCTTCGACCATCCG
AAATCGATGCATGGCTACGAGTTGGATTGCTACGATCCCACAGAAAAACGAAACACCTTCAGAGGAGAGCCTGACTGTGA
AAGTCCCCAGCAGACCTTGCCTGATGAAGCAGAAAAAGTCTCCCTGCCTCCGAGAAATTGAGAAACTGCAAAAGCAGCGG
GAGAAGCGCAGACGGCTGCAGCTGGAGATCCGAGCCCAACGCGCCCTCAACGTCCACACGGGAAACCCCAACTACGAGAT
CATGCGCATGATTGACGAGTACCGCAGGCAGCTGGACAGCAGCAAGATGTCCAGCCTGGAGCCGCGGGAAGACCGTCGGA
TCTATGTCTGTGTGAGGAAGCGGCCTCTCAACCAGCAGGAGACCACCATGAAGGACCTGGATATCATCACCATCCCTTCG
CACAATGTGGTCATGGTGCATGAGTCTAAGCAGAAGGTGGACCTCACTCGCTACCTGGAAAATCAGACATTCTGCTTCGA
CCATGCCTTCGATGACACGGCCTCCAACGAGTTAGTGTACCAGTTCACCGCCCAGCCGCTGGTGGAGTCTATCTTCCGCA
AGGGCATGGCCACCTGTTTTGCCTATGGGCAGACAGGCAGTGGGAAAACACACACCATGGGTGGAGCCTTTTCAGGAAGG
GACCAAGATTGTTCGAAAGGCATTTACTCACTGGTGGCGCAGGATGTCTTCCTTCTGCTCAAAACTTCGGTTTATAAGAA
GTTGGACCTCAAAGTCTATGGGACATTTTTTGAGATTTATGGGGGCAAGGTATATGATTTGTTGAACTGGAAGAAGAAGC
TGCAGGTCCTTGAGGATGGCAATCAGCAAATCCAGGTAGTCGGGTTGCAGGAGCAGGAGGTGTGTTGTGTGGAGGACGTG
CTGAACCTCGTGGAACTGGGGAACAGCTGCCGGACTTCTGGACAGACATCAGTCAATGCCCACTCCTCCAGGAGCCACGC
CGTGTTCCAGATCATCCTAAAGTCGCGAGGGAAACTGCATGGCAAGTTTTCTCTTGTTGACTTAGCTGGGAATGAAAGGG
GAGCAGATACTGCCAAGGTCAACCGGCAAAGACAGCTGGAGGGGGCGGAGATTAATAAGAGTCTCCTCGCGCTCAAGGAA
TGCATCCGAGCTTTGGGTCAGAATAAGTCTCACACCCCGTTTAGAGCCAGCAAACTCACACAGGTGCTCCGGGACTCCTT
TATCGGCCAGAACTCCTTCACTTGCATGATTGCTACTATTTCTCCAGGGATGGCTTCTTGTGAAAACACCCTCAACACCT
TAAGGTATGCAAATAGAGTAAAAGAATTAACTCTAAATTTAAGGTCCCACCATCGTTGTCTCTATCAGGTTGGACAAGAA
GTGCCAAGGATGTTGGAAAATCACATTGGGAATTCAGAAATGCCCCTTCGGAAAGAGGAATTTATTAAAATACCTTGTAT
ACAGAGTGAGGAAGAGGAAGAGACTAACGAAATTGGAACGTTATCCACCCCATTAATGGAAAATACAACAAGCTCATGGA
AAGAATCAGGCCAGGGGCTGGAGGACAACATCCAGGAGAGAACTGATGGGGTAAACTATGATGTTTATTTTTGCATTACC
CAGCTATTGTCCATTTTGGAGCAGAAAATAGGTATTCTGACTGAAATTCAAAAGAAACTGAAATTATTGCGAGCCAACCT
CCAAAAGAAGAGAAAGGTAGAATGA

ORF - retro_pvam_3 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 59.04 %
Parental protein coverage: 63.52 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalELPASANSRKQFSV-PAGPARPSCPAVAEIPLTMVSEEVEEQVHSIRGSSSANPVNSVRRKSCIVKEMEK
E.P....S....SV.P....R..C.A...I.......E......S........P......KS....E.EK
RetrocopyEHPKPSRSLASLSVAPSSTIRNRCMATSWIATIPQKNETPSE-ESLTVKVPSRPCLMKQKKSPCLREIEK
ParentalMKNKREEKRAQNSEMRIKRAQEYDNSFPNWEFARMIKEFRATLDCHPLTMTDPIEEHRICVCVRKRPLNK
....RE..R....E.R..RA.......PN.E..RMI.E.R..LD........P.E..RI.VCVRKRPLN.
RetrocopyLQKQREKRRRLQLEIRAQRALNVHTGNPNYEIMRMIDEYRRQLDSSKMSSLEPREDRRIYVCVRKRPLNQ
ParentalQELTKKEIDVISVPSKCLLFVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVHTIFQGG
QE.T.K..D.I..PS.....VHE.K.KVDLT.YLENQ.FCFD.AFD.TASNE.VY.FTA.PLV..IF..G
RetrocopyQETTMKDLDIITIPSHNVVMVHESKQKVDLTRYLENQTFCFDHAFDDTASNELVYQFTAQPLVESIFRKG
ParentalKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLLKNQPRYRNLGLEVYVTFFEIYNGKLF
.ATCFAYGQTGSGKTHTMGG..SG..Q..SKGIY.....DVFLL.....Y..L.L.VY.TFFEIY.GK..
RetrocopyMATCFAYGQTGSGKTHTMGGAFSGRDQDCSKGIYSLVAQDVFLLLKTSVYKKLDLKVYGTFFEIYGGKVY
ParentalDLLNKKAKLRVLEDGKQQVQVVGLQEHLVTCADDVIKMIDIGSACRTSGQTFANSNSSRSHACFQILLRA
DLLN.K.KL.VLEDG.QQ.QVVGLQE..V.C..DV......G..CRTSGQT..N..SSRSHA.FQI.L..
RetrocopyDLLNWKKKLQVLEDGNQQIQVVGLQEQEVCCVEDVLNLVELGNSCRTSGQTSVNAHSSRSHAVFQIILKS
ParentalKGRVHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRD
.G..HGKFSLVDLAGNERGADT....RQ...EGAEINKSLLALKECIRALGQNK.HTPFR.SKLTQVLRD
RetrocopyRGKLHGKFSLVDLAGNERGADTAKVNRQRQLEGAEINKSLLALKECIRALGQNKSHTPFRASKLTQVLRD
ParentalSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELS
SFIG.NS.TCMIA.ISPG..SCE.TLNTLRYA.RVKEL.
RetrocopySFIGQNSFTCMIATISPGMASCENTLNTLRYANRVKELT

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Pteropus vampyrus was not studied using RNA-Seq expression data.
Pteropus vampyrus was not studied using ChIP-Seq data.
Pteropus vampyrus was not studied using EST data.
Pteropus vampyrus was not studied using FANTOM5 data.
retro_pvam_3 was not experimentally validated.

Retrocopy orthology:
Pteropus vampyrus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 8 parental genes, and 9 retrocopies.

Species Parental gene accession Retrocopies number
Mus musculus ENSMUSG000000286781 retrocopy
Otolemur garnettii ENSOGAG000000069161 retrocopy
Pongo abelii ENSPPYG000000014271 retrocopy
Pteropus vampyrus ENSPVAG00000009856 1 retrocopy
retro_pvam_3 ,
Pteropus vampyrus ENSPVAG000000172061 retrocopy
Sus scrofa ENSSSCG000000039311 retrocopy
Tursiops truncatus ENSTTRG000000007481 retrocopy
Drosophila melanogaster FBgn00302682 retrocopies



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