RetrogeneDB ID: | retro_pvam_579 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | GeneScaffold_3874:1272708..1273091(-) | ||
Located in intron of: | ENSPVAG00000012277 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CMTM3 | ||
Ensembl ID: | ENSPVAG00000013762 | ||
Aliases: | None | ||
Description: | CKLF-like MARVEL transmembrane domain containing 3 [Source:HGNC Symbol;Acc:19174] |
Percent Identity: | 55.81 % |
Parental protein coverage: | 96.24 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | LSFITFVCYVASSASAFLTAP-LLEFLLALFFLFADAMQLNDKWQGLCWPMMDFLRCVTAALIYFAISIT |
.S.I.F..Y..S....FL..P...EFLLA..FLF.DAM.L.D..Q.LC..M.D.L.CV.AALI.F.IS.T | |
Retrocopy | VSLIFFITYLMSLPATFLPGP<RPEFLLAFYFLFIDAMHLKDTCQSLC*AMRDVLPCVMAALICFTISTT |
Parental | AVAKYSDGASKAAGVFGFFATIVFAIDFYLIFNDVAKFLKQGDSTDETTANKAEEENSD |
A.AK.SDGASKA.GV..FFA.I.FA.DFYL.....AKFL..G.S...T.A.K.E..NSD | |
Retrocopy | AIAKSSDGASKATGVLDFFAAIMFATDFYLTLKNKAKFLQ*GVSAGDTIADKVEGKNSD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000047654 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000011770 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000013762 | 1 retrocopy |
retro_pvam_579 ,
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