RetrogeneDB ID: | retro_pvam_1214 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | scaffold_42849:943..1396(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PLP2 | ||
Ensembl ID: | ENSPVAG00000011770 | ||
Aliases: | None | ||
Description: | proteolipid protein 2 (colonic epithelium-enriched) [Source:HGNC Symbol;Acc:9087] |
Percent Identity: | 53.85 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MADSERLSAPGCWAACTNLLRIRKGILLFAEIILCLVILICFSASTSAYSSLSVFEMILAAIFFVIYMCD |
M.DS.R.SAP..WA.CTN..R..KG.LLFAEII.CL.IL.CFS.S...YSSLS...M..A..FF.IY... | |
Retrocopy | MEDSQRDSAPSYWATCTNFARSQKGFLLFAEIIFCLAILLCFSVSAPVYSSLSAGHMTVAVFFFAIYSLN |
Parental | LNTKIKIINWPWSDFFRSLIAAILYLI-TSIVVLIERGHHSKIIA-GVLG-LIATCLFGFDAYDT-FPLK |
L.TKI..I.WPWSDFFRS....ILYLI.................A.GVLG.LI.TCL...DA..T.FP.. | |
Retrocopy | LHTKIHCISWPWSDFFRSFVTGILYLI<MISIIVLDKKENCFTVAAGVLG<LIVTCLLFYDASIT<FPC- |
Parental | QQRHTAAPTDPADGPV |
....TAA.TD..DGPV | |
Retrocopy | GSKDTAAYTDLGDGPV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000015798 | 1 retrocopy | |
Equus caballus | ENSECAG00000000216 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000004483 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000013817 | 3 retrocopies | |
Mus musculus | ENSMUSG00000031146 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000011770 | 2 retrocopies |
retro_pvam_1214 , retro_pvam_810,
|
Pteropus vampyrus | ENSPVAG00000013762 | 1 retrocopy |