RetrogeneDB ID: | retro_rnor_1369 | ||
Retrocopy location | Organism: | Rat (Rattus norvegicus) | |
| Coordinates: | 18:76014603..76015074(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | ENSRNOG00000033014 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_rnor_1369
ATGTTCTCTTGCTGTCTTCGGACTACTCGAGGCTCAGGCCTCAAGAAAGACAACAGGGAAGGCCATGGTGGTGTCTGGAG
GCACAGGGTTGGCTCTTGTCTTCAACGCCTGTGGCCATTTTCCCGAAAGGGAAGATCGTTGACCAGGAGCAGTCAAGGAC
AGGAGCACACAGACAAGGATGAGAATGATTCTGCAGCACAGGACCTGAGGGAGTCCTATAGAGACTCCAACTTTAGTACA
GAGGCTGTGGTTAAGCTAAGGAACAACCTGGGGCCTTCTCTGCAGGAAGGGGACACCTTTTATGTCCCTGCCTTTGTGAT
CACATACCAAAGATTTGACACCCCCCTACTGGTACTGGACCAGCTGTTCCTGAGGTATGCCAACTTCAGCCCTTATTGTG
AAGAGGATGAACAAATAAATAACACCCTCTGTAGCTTCCTGGAAACATGGATGGACAAGAACACCTCGGAA
ORF - retro_rnor_1369 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 86.62 % |
| Parental protein coverage: | 69.78 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | MFSCCLRTTRGSGLKKDNREGHGGAWRHRVHSCLRRLWPFSRKGRSSTKTSQSHEHTDKSENDSAAQDLS |
| MFSCCLRTTRGSGLKKDNREGHGG.WRHRV.SCL.RLWPFSRKGRS.T..SQ..EHTDK.ENDSAAQDL. | |
| Retrocopy | MFSCCLRTTRGSGLKKDNREGHGGVWRHRVGSCLQRLWPFSRKGRSLTRSSQGQEHTDKDENDSAAQDLR |
| Parental | KPYRDSNISTEAVVKLGNKLGPSLQEGDTFYVPAFSIIYQRFDTPLLVLDQLFLRCANFSPYCEEDEQIN |
| ..YRDSN.STEAVVKL.N.LGPSLQEGDTFYVPAF.I.YQRFDTPLLVLDQLFLR.ANFSPYCEEDEQIN | |
| Retrocopy | ESYRDSNFSTEAVVKLRNNLGPSLQEGDTFYVPAFVITYQRFDTPLLVLDQLFLRYANFSPYCEEDEQIN |
| Parental | NALCSFLETWMDKNTED |
| N.LCSFLETWMDKNT.. | |
| Retrocopy | NTLCSFLETWMDKNTSE |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP017611_brain | 0 .00 RPM | 0 .00 RPM |
| SRP017611_kidney | 0 .00 RPM | 0 .00 RPM |
| SRP017611_liver | 0 .00 RPM | 0 .00 RPM |
Rattus norvegicus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_rnor_1369 retrocopy.
Rattus norvegicus was not studied using FANTOM5 data.
retro_rnor_1369 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_rnor_1369 has 0 orthologous retrocopies within eutheria group .Parental genes homology:
Parental genes homology involve 2 parental genes, and 3 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Rattus norvegicus | ENSRNOG00000033014 | 2 retrocopies |
retro_rnor_1368, retro_rnor_1369 ,
|
| Sus scrofa | ENSSSCG00000010353 | 1 retrocopy |