>retro_rnor_1740
ATGGTGCACCAGACCGGCATACACGCCACTTGAAGAACTAAAGGACTTCTTTGCCAGGGCCCAGACTGGTTCCATCCGAC
TTATTAGAGTCATCATTGAGGACGAGCAGCTTGTGCTGGGTGCCTCGCAGGAGCCAGTGGGACGTTGGGACCAGGACTAC
GACAGGGACGTGCTGCCACTGCTAGATGCCCAAGAGCCCTGCTACCTCCTCTTCCAACTTGATTCGCAAAATGCTCAGGG
TTTCGAGTGGCTTTTCCTGGCCTGGTCACCTGACAATTCGCCTGTGCAGCTGAAGAAGCTGTATGCAGCCACACGAGCCA
CATTTAAGGAGTTTGGAGGCGGCCACATCAAGGATGAGCGCTTCGGGATAGTAAAGGATGACCTCTCCTTGCCTGGCTTG
AGAAGCCCCTGTCATCCTGTGCTGCACATGCCCCACTGACTTCGGCTGAGCGAGAGATCCAGCAGATCCGAATCAATGAG
GTGAAGACTGACATCAGCGTAGAAAGTAAGCACCTGACCCTGCAGGGCCTGGCTTTGCCCCTGCAGCCTGAGGTCCAGCG
GGCAGTTCAGCAACTCAAGCAGAAGACAGGCAACTATATCCAGCTGAAGCTGGACCTGGAGCGGGAGACCATCGAGCTGG
TACACGCAGAACCCACAAATGTGGCCCAGCTGCCTTCACGGGTTCCCCAAGATGCTGCCCACTACCACTTCTTCCTGGAC
AAGCATACGCATGAGGGTGACTCCCTTGAATCTGTGGTCTTCGTCTACTCCATGCCGGGGTACAAGTGCAGCATTAAGGA
GAGCATGCTCTACTCCAGCAGCGAGAGCCGCCTCCTTGACTCTGTAGAGCAAGACTTCCAGCTGGAGGTAGCTAAGAAGA
TGGAGACCAGCGATGGGGCGGAGCTGACTGCTGAGTTCCTCTATGATGAGGTGCATCCCAAGCAGCACGCCTTCAAGCAG
GCGTTCGCCAAGCCCAAAGGCCCCGGGGGGCAAGCGGGGCCACAGGCGCCTCATCAGG
ORF - retro_rnor_1740 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
87.76 % |
Parental protein coverage: |
97.42 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | MAHQTGIHAT-EELKEFFAKARAGSIRLIKVIIEDEQLVLGASQEPVGRWDQDYDRAVLPLLDAQEPCYL |
| M.HQTGIHAT.EELK.FFA.A..GSIRLI.VIIEDEQLVLGASQEPVGRWDQDYDR.VLPLLDAQEPCYL |
Retrocopy | MVHQTGIHAT>EELKDFFARAQTGSIRLIRVIIEDEQLVLGASQEPVGRWDQDYDRDVLPLLDAQEPCYL |
|
Parental | LFRLDSQNAQGFEWLFLAWSPDNSPVRLKMLYAATRATVKKEFGGGHIKDELFGTVKDDLSLAGY-QKHL |
| LF.LDSQNAQGFEWLFLAWSPDNSPV.LK.LYAATRAT.K.EFGGGHIKDE.FG.VKDDLSL.G...K.L |
Retrocopy | LFQLDSQNAQGFEWLFLAWSPDNSPVQLKKLYAATRATFK-EFGGGHIKDERFGIVKDDLSLPGL<EKPL |
|
Parental | SSCAAPAPLTSAERELQQIRINEVKTEISVESKHQTLQGLAFPLQPEAQRALQQLKQKTVNYIQLKLDLE |
| SSCAA.APLTSAERE.QQIRINEVKT.ISVESKH.TLQGLA.PLQPE.QRA.QQLKQKT.NYIQLKLDLE |
Retrocopy | SSCAAHAPLTSAEREIQQIRINEVKTDISVESKHLTLQGLALPLQPEVQRAVQQLKQKTGNYIQLKLDLE |
|
Parental | RETIELVHTEPTNVAQLPSRVPRDAARYHFFLYKHTHEGDSLESVVFIYSMPGYKCSIKERMLYSSCKSR |
| RETIELVH.EPTNVAQLPSRVP.DAA.YHFFL.KHTHEGDSLESVVF.YSMPGYKCSIKE.MLYSS..SR |
Retrocopy | RETIELVHAEPTNVAQLPSRVPQDAAHYHFFLDKHTHEGDSLESVVFVYSMPGYKCSIKESMLYSSSESR |
|
Parental | LLDSVEQDFQLEIAKKIEIGDGAELTAEFLYDEVHPKQHAFKQAFAKPKGPGG-KRGHKRLIR |
| LLDSVEQDFQLE.AKK.E..DGAELTAEFLYDEVHPKQHAFKQAFAKPKGPGG.KRGH.RLIR |
Retrocopy | LLDSVEQDFQLEVAKKMETSDGAELTAEFLYDEVHPKQHAFKQAFAKPKGPGG>KRGHRRLIR |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .00 RPM |
23 .87 RPM |
SRP017611_kidney |
0 .00 RPM |
4 .61 RPM |
SRP017611_liver |
0 .00 RPM |
1 .41 RPM |
Rattus norvegicus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_rnor_1740 retrocopy.
Rattus norvegicus was not studied using FANTOM5 data.
retro_rnor_1740 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_rnor_1740 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
2 parental genes, and
3 retrocopies.