RetrogeneDB ID: | retro_rnor_2266 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 5:165949039..165949479(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000015363 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ube2h | ||
Ensembl ID: | ENSRNOG00000048205 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2H [Source:RefSeq peptide;Acc:NP_001165598] |
Percent Identity: | 84.56 % |
Parental protein coverage: | 84.97 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | KFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDGSSRTVCLDVINQTWTALYDLTNIFE |
KFYGPQGTPYEGGVWKVRVDL.DKYPFKSPS.GFMNKIF.P.ID..S.TVCLDVINQTWTALYDLTNIFE | |
Retrocopy | KFYGPQGTPYEGGVWKVRVDLRDKYPFKSPSVGFMNKIFLPHIDEASGTVCLDVINQTWTALYDLTNIFE |
Parental | SFLPQLLAYPNPIDPLNG-DAAAMYLHRPEEYKQKIKEYIQKYATEEA-LKEQEEGTGDSSSESSMSDFS |
.F.PQLLAYPNPIDPLNG..AAAMYLHRPE.YKQKIKEY..KYAT.EA.LKE...GTGDSS.ESSMSD.S | |
Retrocopy | AFVPQLLAYPNPIDPLNGVTAAAMYLHRPEKYKQKIKEYVLKYAT-EA<LKEPKKGTGDSSLESSMSD*S |
Parental | EDEAQDMEL |
E.EAQD.EL | |
Retrocopy | EAEAQDKEL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 143 .15 RPM |
SRP017611_kidney | 0 .00 RPM | 96 .79 RPM |
SRP017611_liver | 0 .00 RPM | 109 .19 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000003605 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000010520 | 1 retrocopy | |
Homo sapiens | ENSG00000186591 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012685 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000017997 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000048205 | 2 retrocopies |
retro_rnor_2188, retro_rnor_2266 ,
|