>retro_rnor_2762
ATGGCGGTCTCTGCGCTCCAGCTGTGGCGTATGGGCGGGCTGCTGAGAAGACGCTTCCCAACCTGCTTGTCTCCTTGGAA
GATTCCTCCTCGTGTCCTCAAATCCTCACAACCGGAAGCTCTAGTCAGTCTGACAAACAATGCAGTAGCCTTTGCACCTC
TGCAGACACTTACTGATGAGGAAATTATGATGAAGCAGACAGTCAAAAAATTTGCACAGGAGCACGTTGCTCCTCTGGTT
TCCTCTATGGATGAGAACTCAAAAATGGAGAAATCGGTGATCCAGGGATTGTTCCAGCAAGGGCTGATGGGCATTGAAGT
TGAAGCACAATATGGAGGGACAGAAGCTTCCTTTTTCTGCTCTGTCCTAGTGATAGAGGAACTAGCTAAGGTGGATGCTT
CGGTGGCTCTCCTGTGTGACATCCAGAACACAATAATTAACAACCTGTTTAGAAAACACGCTTCAGAAGAACAGAAGGCC
ACCTATTTGCCAAAGCTGGTTACAGAAAAATTAGGGAGCTTTTGCCCCTCTGAAGCTGGAGCCGGTAGCGACTCTTTCGC
TATGAAAACAAGAGCTGATAAAAGTGGAAATTACTACGTCCTCAATGGGTCGAAGATGTGGATCAGCCATGCCGAGCATG
CAGAGCTCTTCCTGGTCTTCGCCAATGTGGACCCCAGCTCTGGCTACAGAGGCATCACCTGCTTCTTAGTAGACCGAGAT
ACAGAAGGTTTCCAGATAGGGAAACGAGAAAATAAAATGGGCATCAGAGCTTCATCCACCTGTCAGTTAACATTTGAAAA
TGTTAAGGTTCCAGAGACTAATATTTTGGGGAAAATTGGGCATGGTTATAAGTATGCCATAGGAAGTCTTAATGAAGGTA
GAATCGGAATTGCTGCACAGATGCTAGGACTGGCCCAAGGATGTTTGACTACACTATTCCATACATT
ORF - retro_rnor_2762 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
88.96 % |
Parental protein coverage: |
83.82 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | MAVSAFQLWRAGGLLRRNFLTHSSSWKIPPRVLKSSQPEALLSVTNNALCFAPLQTFTDEDIMMQKAVKK |
| MAVSA.QLWR.GGLLRR.F.T..S.WKIPPRVLKSSQPEAL.S.TNNA..FAPLQT.TDE.IMM...VKK |
Retrocopy | MAVSALQLWRMGGLLRRRFPTCLSPWKIPPRVLKSSQPEALVSLTNNAVAFAPLQTLTDEEIMMKQTVKK |
|
Parental | FAQEQIAPLVSTMDENSKMEKSVIQGLFQQGMMGIEVEAKYGGTEASFLCSVLVIEELAKVDASVALLCD |
| FAQE..APLVS.MDENSKMEKSVIQGLFQQG.MGIEVEA.YGGTEASF.CSVLVIEELAKVDASVALLCD |
Retrocopy | FAQEHVAPLVSSMDENSKMEKSVIQGLFQQGLMGIEVEAQYGGTEASFFCSVLVIEELAKVDASVALLCD |
|
Parental | IQNTVINKLFRKHGTEEQKATYLPKLVTEKLGSFCLSEAGAGSDSFALKTRADKSGNYYVINGSKMWISN |
| IQNT.IN.LFRKH..EEQKATYLPKLVTEKLGSFC.SEAGAGSDSFA.KTRADKSGNYYV.NGSKMWIS. |
Retrocopy | IQNTIINNLFRKHASEEQKATYLPKLVTEKLGSFCPSEAGAGSDSFAMKTRADKSGNYYVLNGSKMWISH |
|
Parental | AEHAELFLVFANVDPPSGYRGITCFLVDRDTEGFQIGRRENKMGIRASSTCQLTFENVKVPETSVLGKIG |
| AEHAELFLVFANVDP.SGYRGITCFLVDRDTEGFQIG.RENKMGIRASSTCQLTFENVKVPET..LGKIG |
Retrocopy | AEHAELFLVFANVDPSSGYRGITCFLVDRDTEGFQIGKRENKMGIRASSTCQLTFENVKVPETNILGKIG |
|
Parental | HGYKYAIGSLNEGRIGIAAQMLGLAQGC-FDYTIPYI |
| HGYKYAIGSLNEGRIGIAAQMLGLAQGC.FDYTIPYI |
Retrocopy | HGYKYAIGSLNEGRIGIAAQMLGLAQGC<FDYTIPYI |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .00 RPM |
17 .90 RPM |
SRP017611_kidney |
0 .00 RPM |
51 .43 RPM |
SRP017611_liver |
0 .00 RPM |
48 .68 RPM |
Rattus norvegicus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_rnor_2762 retrocopy.
Rattus norvegicus was not studied using FANTOM5 data.
retro_rnor_2762 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_rnor_2762 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
2 parental genes, and
5 retrocopies.