>retro_rnor_2763
TGGCGTATGGGCGGGCTGCTGAGAAGACGCTTCCCAACCTGCTTGTCTCCTTGGAAGATTCCTCCTCGTGTCCTCAAATC
CTCACAACCGGAAGCTCTAGTCAGTCTGACAAACAATGCAGTAGCCTTTGCACCTCTGCAGACACTTACTGATGAGGAAA
TTATGATGAAGCAGACAGTCAAAAAATTTGCACAGGAGCACGTTGCTCCTCTGGTTTCCTCTATGGATGAGAACTCAAAA
ATGGAGAAATCGGTGATCCAGGGATTGTTCCAGCAAGGGCTGATGGGCATTGAAGTTGAAGCACAATATGGAGGGACAGA
AGCTTCCTTTTTCTGCTCTGTCCTAGTGATAGAGGAACTAGCTAAGGTGGATGCTTCGGTGGCTCTCCTGTGTGACATCC
AGAACACAATAATTAACAACCTGTTTAGAAAACACGCTTCAGAAGAACAGAAGGCCACCTATTTGCCAAAGCTGGTTACA
GAAAAATTAGGGAGCTTTTGCCCCTCTGAAGCTGGAGCCGGTAGCGACTCTTTCGCTATGAAAACAAGAGCTGATAAAAG
TGGAAATTACTACGTCCTCAATGGGTCGAAGATGTGGATCAGCCATGCCGAGCATGCAGAGCTCTTCCTGGTCTTCGCCA
ATGTGGACCCCAGCTCTGGCTACAGAGGCATCACCTGCTTCTTAGTAGACCGAGATACAGAAGGTTTCCAGATAGGGAAA
CGAGAAAATAAAATGGGCATCAGAGCTTCATCCACCTGTCAGTTAACATTTGAAAATGTTAAGGTT
ORF - retro_rnor_2763 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
88.17 % |
Parental protein coverage: |
69.5 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | WRAGGLLRRNFLTHSSSWKIPPRVLKSSQPEALLSVTNNALCFAPLQTFTDEDIMMQKAVKKFAQEQIAP |
| WR.GGLLRR.F.T..S.WKIPPRVLKSSQPEAL.S.TNNA..FAPLQT.TDE.IMM...VKKFAQE..AP |
Retrocopy | WRMGGLLRRRFPTCLSPWKIPPRVLKSSQPEALVSLTNNAVAFAPLQTLTDEEIMMKQTVKKFAQEHVAP |
|
Parental | LVSTMDENSKMEKSVIQGLFQQGMMGIEVEAKYGGTEASFLCSVLVIEELAKVDASVALLCDIQNTVINK |
| LVS.MDENSKMEKSVIQGLFQQG.MGIEVEA.YGGTEASF.CSVLVIEELAKVDASVALLCDIQNT.IN. |
Retrocopy | LVSSMDENSKMEKSVIQGLFQQGLMGIEVEAQYGGTEASFFCSVLVIEELAKVDASVALLCDIQNTIINN |
|
Parental | LFRKHGTEEQKATYLPKLVTEKLGSFCLSEAGAGSDSFALKTRADKSGNYYVINGSKMWISNAEHAELFL |
| LFRKH..EEQKATYLPKLVTEKLGSFC.SEAGAGSDSFA.KTRADKSGNYYV.NGSKMWIS.AEHAELFL |
Retrocopy | LFRKHASEEQKATYLPKLVTEKLGSFCPSEAGAGSDSFAMKTRADKSGNYYVLNGSKMWISHAEHAELFL |
|
Parental | VFANVDPPSGYRGITCFLVDRDTEGFQIGRRENKMGIRASSTCQLTFENVKV |
| VFANVDP.SGYRGITCFLVDRDTEGFQIG.RENKMGIRASSTCQLTFENVKV |
Retrocopy | VFANVDPSSGYRGITCFLVDRDTEGFQIGKRENKMGIRASSTCQLTFENVKV |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .00 RPM |
17 .90 RPM |
SRP017611_kidney |
0 .00 RPM |
51 .43 RPM |
SRP017611_liver |
0 .00 RPM |
48 .68 RPM |
Rattus norvegicus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_rnor_2763 retrocopy.
Rattus norvegicus was not studied using FANTOM5 data.
retro_rnor_2763 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_rnor_2763 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
2 parental genes, and
5 retrocopies.