>retro_rnor_592
GAACAGACGCAAGCAGTGGTTCAGTCCAGTGCTTTGCCACTTTTCCTGAGGCTTCTGCATTCACCCCATCAGAATGTCTA
TGAACAGGCAGTGTGGGTATTGGGAAACCTCATAGGTGATGGACCTCAGTGTAGACATTATGTGATATGCCTTGGAGTTG
TAAAACCTCTGCTTTCATTCATAAGTCCATCTATTCCTATAACATTCTTAAGAAATGTTACCTGGGTCATGGTCAACTTA
TGTCTCCACAAGGACCCACCACCACCAATGGGGACAATTCAGGAGATTCTTCTAGCTCTTTGTGTATTAATTCATCACAC
AGATGTAAATATACTGGTAGATACGGTCTGGGCCCTATCTTACCTTACGGATGCTGGCAATGAGCAGATGCAGATGGTAA
TAGACTCTGGAATAGTTCCTCACTTGGTTCCACTACTCAGCCACCAGGAAGTTAAAGTTCAGACTGCTGCGCTGCGAGCT
GTGGGCAACATTGTCACTGGGACTGATGAGCAAACACAAGTAGTTTTAAACTGTGATGCTCTCTCACACTTCCCAGCACT
CCTCACTCATCCCAAAGAGAAAATTAATAAGGAAGCAGTGTGGTTCCTCTCCAACATCACCGCAGGAAATCAACAGCAGG
TTCAGGCAGTAATTGATGCCAATCTTGTACCAATGATAATACACCTTTTGGATAAGGGAGATTTTGGCACTCAGAAAGAA
GCTGCTTGGGCCATAAGTAACTTAACAATTAGTGGGAGGAAAGACCAAGTCGCCTATCTCATCCAACAAAATGCTATTCC
ACCTCTTTGCAATTTGGTGACTGTAAAAGATGCACAAGTTGTGCAAGTAGTGCTTGATGGACTAAGTAATATATTAAAAA
TGGCTGAAGATCAAGCAGAAACCATAGCCAATCTCATAGAAGAATGTGGTGGACTGGAGAAAATTGAACAACTTCAGAAT
CATGAAAATGAGGACATCTACAAATTGGCCTATGAGATCATTGACCAGTTCTTCTCTTCAGATGATATTGACGAAGATCC
TAGCCTTGTTCCAGAGTCAGTTCAAGGTGGAGCATTTGGTTTCAATTCATCTACTAATGTACCAACAGAAGGGTTCCAGT
TT
ORF - retro_rnor_592 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
95.99 % |
Parental protein coverage: |
71.79 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | EQTQAVVQSNAVPLFLRLLHSPHQNVCEQAVWALGNIIGDGPQCRDYVISLGVVKPLLSFISPSIPITFL |
| EQTQAVVQS.A.PLFLRLLHSPHQNV.EQAVW.LGN.IGDGPQCR.YVI.LGVVKPLLSFISPSIPITFL |
Retrocopy | EQTQAVVQSSALPLFLRLLHSPHQNVYEQAVWVLGNLIGDGPQCRHYVICLGVVKPLLSFISPSIPITFL |
|
Parental | RNVTWVMVNLCRHKDPPPPMETIQEILPALCVLIHHTDVNILVDTVWALSYLTDAGNEQIQMVIDSGIVP |
| RNVTWVMVNLC.HKDPPPPM.TIQEIL.ALCVLIHHTDVNILVDTVWALSYLTDAGNEQ.QMVIDSGIVP |
Retrocopy | RNVTWVMVNLCLHKDPPPPMGTIQEILLALCVLIHHTDVNILVDTVWALSYLTDAGNEQMQMVIDSGIVP |
|
Parental | HLVPLLSHQEVKVQTAALRAVGNIVTGTDEQTQVVLNCDALSHFPALLTHPKEKINKEAVWFLSNITAGN |
| HLVPLLSHQEVKVQTAALRAVGNIVTGTDEQTQVVLNCDALSHFPALLTHPKEKINKEAVWFLSNITAGN |
Retrocopy | HLVPLLSHQEVKVQTAALRAVGNIVTGTDEQTQVVLNCDALSHFPALLTHPKEKINKEAVWFLSNITAGN |
|
Parental | QQQVQAVIDANLVPMIIHLLDKGDFGTQKEAAWAISNLTISGRKDQVAYLIQQNVIPPFCNLLTVKDAQV |
| QQQVQAVIDANLVPMIIHLLDKGDFGTQKEAAWAISNLTISGRKDQVAYLIQQN.IPP.CNL.TVKDAQV |
Retrocopy | QQQVQAVIDANLVPMIIHLLDKGDFGTQKEAAWAISNLTISGRKDQVAYLIQQNAIPPLCNLVTVKDAQV |
|
Parental | VQVVLDGLSNILKMAEDQAETIANLIEECGGLEKIEQLQNHENEDIYKLAYEIIDQFFSSDDIDEDPSLV |
| VQVVLDGLSNILKMAEDQAETIANLIEECGGLEKIEQLQNHENEDIYKLAYEIIDQFFSSDDIDEDPSLV |
Retrocopy | VQVVLDGLSNILKMAEDQAETIANLIEECGGLEKIEQLQNHENEDIYKLAYEIIDQFFSSDDIDEDPSLV |
|
Parental | PESVQGGTFGFNSSTNVPTEGFQF |
| PESVQGG.FGFNSSTNVPTEGFQF |
Retrocopy | PESVQGGAFGFNSSTNVPTEGFQF |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .07 RPM |
58 .31 RPM |
SRP017611_kidney |
0 .07 RPM |
77 .95 RPM |
SRP017611_liver |
0 .00 RPM |
36 .38 RPM |
Rattus norvegicus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_rnor_592 retrocopy.
Rattus norvegicus was not studied using FANTOM5 data.
retro_rnor_592 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_rnor_592 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
5 parental genes, and
6 retrocopies.