>retro_rnor_987
ACTAATATACCATCAGGAACTTCTGCACAGACTCAAGCTGATGTACAGTCCAATGCAGTACCACATTTTTCTGTGACTCC
TCCATTTCCCACATCAGAATGTTTGTGAACAAGTGGTGTGGGCTTTGGGAAACAATGTAGGTGATGGTCTTCATGCAGAT
TGTGTCTTATCACTGGGAGTTGTCAAACTTCTTCTGTCCTTAATCAATTCTTCCATTCCTATCACCTTTCTTCAGAATGT
CACATGTGTCATTGTCAATCTTTGTAGAAATAAAGAACCCTCACCACCTATGGAGACCGTTCAGGAGATTTTGCCAGCTT
TATATGTCCTCATCTACCATACAACATTAGACATTCTTGTAGACACTGTTTGGGTACTGTCCTACTTGACAGGAAATGAG
CAGATACAGATGGTTACTGATTTAGGTGTTGAACCCTTCCTCATGCCCCTTCTGAGTCACCAGAAAGTCAAAGTTCAAAC
TGCAGCACTCAGAGAAGTTGGGAACATAGTTACTGGCACTGATGTGCAGACCCAAGTGCTTCTTAGTTGTGGTGTGCTGT
CCCACTTTCCAAACCTGTTGACACACCCAAAAGAGAAAATAATAAGGAAGCAGTATGGTTCCTTTCCAATATAACAGCAG
GCAATGAGCAGCAAGTTCAAACTGTAATAGATGCTGGGTTAATCCCTATGATTATTCATCAGCTCCCTAAGGGGGACTTC
AGAACACAAAAGGAAGCTCCTTGGGCAATTAGCAGTTTAACAATAAGTGGCAGAAAAGGTCAAGTTGAATACCTTGTACA
ACAGAATGCAATACCACCATTCTGTAATTTACTGTCATTAAAAAATCTCAAGTGGTGCAGGTAGTTCTAGATGGTCTAAA
AAAATCATGCTGACTGATGTCTGATGATGAAGCAAGTACAATAGCTTAGATCATAGAAAAGTATGGAGGCTTGGAGAAAA
TTGAAGTTTTGCAGCAACATGAAATTGAAGACATATATAAATTAGCATTTTAAATCATAAATCAATACTTTTCAGGTGAT
GATATTGATGAAGATCCTAGACTCATTCCTGAAGCAACACAAAGAGTTACTTAGAATTTTGATCCAACAGCCAACCTTCA
AACAAAAGAATTTAATTTC
ORF - retro_rnor_987 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
82.12 % |
Parental protein coverage: |
73.32 % |
Number of stop codons detected: |
5 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | TNIASGTSAQTQAVVQSNAVP-LFLRLLHSPHQNVCEQAVWALGNIIGDGPQCRDYVISLGVVKPLLSFI |
| TNI.SGTSAQTQA.VQSNAVP..FL.LLH.PHQNVCEQ.VWALGN..GDG....D.V.SLGVVK.LLS.I |
Retrocopy | TNIPSGTSAQTQADVQSNAVP>IFL*LLHFPHQNVCEQVVWALGNNVGDGLHA-DCVLSLGVVKLLLSLI |
|
Parental | NPSIPITFLRNVTWVIVNLCRNKDPPPPMETVQEILPALCVLIYHTDINILVDTVWALSYLTDGGNEQIQ |
| N.SIPITFL.NVT.VIVNLCRNK.P.PPMETVQEILPAL.VLIYHT...ILVDTVW.LSYLT..GNEQIQ |
Retrocopy | NSSIPITFLQNVTCVIVNLCRNKEPSPPMETVQEILPALYVLIYHTTLDILVDTVWVLSYLT--GNEQIQ |
|
Parental | MVIDSGVVPFLVPLLSHQEVKVQTAALRAVGNIVTGTDEQTQVVLNCDVLSHFPNLLSHPKEKI-NKEAV |
| MV.D.GV.PFL.PLLSHQ.VKVQTAALR.VGNIVTGTD.QTQV.L.C.VLSHFPNLL.HPKEKI.NKEAV |
Retrocopy | MVTDLGVEPFLMPLLSHQKVKVQTAALREVGNIVTGTDVQTQVLLSCGVLSHFPNLLTHPKEKI<NKEAV |
|
Parental | WFLSNITAGNQQQVQAVIDAGLIPMIIHQLAKGDFGTQKEAAWAISNLTISGRKDQVEYLVQQNVIPPFC |
| WFLSNITAGN.QQVQ.VIDAGLIPMIIHQL.KGDF.TQKEA.WAIS.LTISGRK.QVEYLVQQN.IPPFC |
Retrocopy | WFLSNITAGNEQQVQTVIDAGLIPMIIHQLPKGDFRTQKEAPWAISSLTISGRKGQVEYLVQQNAIPPFC |
|
Parental | NLLS-VKDSQVVQVVLDGLKNIL-IMAGDEASTIAEIIEECGGLEKIEVLQQHENEDIYKLAFEIIDQYF |
| NLLS..K.SQVVQVVLDGLK.....M..DEASTIA.IIE..GGLEKIEVLQQHE.EDIYKLAF.II.QYF |
Retrocopy | NLLS<IKKSQVVQVVLDGLKKSC*LMSDDEASTIA*IIEKYGGLEKIEVLQQHEIEDIYKLAF*IINQYF |
|
Parental | SGDDIDEDPSLIPEATQGGTYNFDPTANLQTKEFNF |
| SGDDIDEDP.LIPEATQ..T.NFDPTANLQTKEFNF |
Retrocopy | SGDDIDEDPRLIPEATQRVT*NFDPTANLQTKEFNF |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .00 RPM |
42 .71 RPM |
SRP017611_kidney |
0 .00 RPM |
22 .89 RPM |
SRP017611_liver |
0 .00 RPM |
17 .21 RPM |
Rattus norvegicus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_rnor_987 retrocopy.
Rattus norvegicus was not studied using FANTOM5 data.
retro_rnor_987 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_rnor_987 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
6 parental genes, and
6 retrocopies.