>retro_rnor_614
CGTTTGGATGTCATTGTCCAGTCCTCTGGCTGGTCTGACCTAGCTAAGAGTCAGACAGAAAAATTAGCTAAAGTTTAGCA
GCCCAAGCGTTCTGTCTTGTCTCCTAAAGGTACTATTTCCGTTGCTCATCTTTTGGCCACCAGACAAGACTTGTCAAAGA
TTTTAAGGACAAGTAATGGGTCCATAGGAGAAAAGACTGCCTGTGCCATTAATAAGGTGTTGATGGGCAGGGTGTCTGAC
AGAGGTGGCAGACCTAGTGAAATTGAACCCCTGCTTCCAAAGATGCCACCGTGGCAGAAAAGACAAGATGGCCCCCAGCA
GCAAGCAGGAGGCTGAGGTGGAGGGAGATTTGGTTATAAACATTCCTCATATGGAGGACGAGGAGGTCATGAACAAGGAG
GGTGAGGTGGATGTGGTGGCTATGACCATGGTGGGTGAGGGGGAGGAAGAGGAAAAAAGCATCAAGGAGGCTGGCCAGAT
GGAGGGAGTGGAGGTGGAGGTGGCTACCAGGATGGCGGTTATCGAGATCCGGGCTTCCAGCCTGGTGGCTATCATGGTGG
CCACAGCAGTGGCTATCAAGGGGGTGGAGATGGTGGTTTCCAAACATCTTCATATAGAGGAAGTGGATACCAGGGCAGTG
GATACCAGCAGGACAATAGATACCAAGATGGTGGGCACCATGGCGAATAAGGCAGTGGTCTTGGGGGAAGAGGTGGTTGA
GGAGGTCTGGAAGGATGGGGAAGCCAGGGATGAGGCTGGGGAGGAAGAAGAATCCAGACTTAACACTAGGGGGCCAGTTT
GAACAGCATTTCCAACATGGAGGCTATCAGTATAGTCATTCTGGATTTGGACAAGGAAGACATCATACTAGT
ORF - retro_rnor_614 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
86.3 % |
Parental protein coverage: |
56.5 % |
Number of stop codons detected: |
8 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | RLDVTVQSFGWSDRAKSQTEKLAKVYQPKRSVLSPKGNISIAHLLAARQDLSKILRTSSGSIREKTACAI |
| RLDV.VQS.GWSD.AKSQTEKLAKV.QPKRSVLSPKG.IS.AHLLA.RQDLSKILRTS.GSI.EKTACAI |
Retrocopy | RLDVIVQSSGWSDLAKSQTEKLAKV*QPKRSVLSPKGTISVAHLLATRQDLSKILRTSNGSIGEKTACAI |
|
Parental | NKVLMGRVPDRGGRPNEIEPPPPEMPPWQKRQDGPQQQAGGRGGGRGGYEHSSYGGRGGHEQGGRGGRGG |
| NKVLMGRV.DRGGRP.EIEP..P.MPPWQKRQDGPQQQAGG.GGGR.GY.HSSYGGRGGHEQGG.GG.GG |
Retrocopy | NKVLMGRVSDRGGRPSEIEPLLPKMPPWQKRQDGPQQQAGG*GGGRFGYKHSSYGGRGGHEQGG*GGCGG |
|
Parental | YDHGGRGGGRGNKHQGGWTDGGSASGGGYQDGGYRDPGFQPGGYHGGHSSGYQGGGYGGFQTSSYTGSGY |
| YDHGG.GGGRG.KHQGGW.DGGS..GGGYQDGGYRDPGFQPGGYHGGHSSGYQGGG.GGFQTSSY.GSGY |
Retrocopy | YDHGG*GGGRGKKHQGGWPDGGSGGGGGYQDGGYRDPGFQPGGYHGGHSSGYQGGGDGGFQTSSYRGSGY |
|
Parental | QGGGYQQDNRYQDGGHHGERGSGRGGRGGRGGRGGRGSQGGGWGGRGSQTYH-QGGQFEQHFQHGGYQYS |
| QG.GYQQDNRYQDGGHHGE.GSG.GGRGG.GG..G.GSQG.GWGGR..QT.H..GGQFEQHFQHGGYQYS |
Retrocopy | QGSGYQQDNRYQDGGHHGE*GSGLGGRGG*GGLEGWGSQG*GWGGRRIQT*H<LGGQFEQHFQHGGYQYS |
|
Parental | HSGFGQGRHYTS |
| HSGFGQGRH.TS |
Retrocopy | HSGFGQGRHHTS |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .00 RPM |
26 .82 RPM |
SRP017611_kidney |
0 .00 RPM |
35 .80 RPM |
SRP017611_liver |
0 .00 RPM |
21 .99 RPM |
Rattus norvegicus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_rnor_614 retrocopy.
Rattus norvegicus was not studied using FANTOM5 data.
retro_rnor_614 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_rnor_614 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
5 parental genes, and
6 retrocopies.