RetrogeneDB ID: | retro_rnor_749 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 10:47144757..47144980(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Slirp | ||
Ensembl ID: | ENSRNOG00000012314 | ||
Aliases: | None | ||
Description: | SRA stem-loop-interacting RNA-binding protein, mitochondrial [Source:RefSeq peptide;Acc:NP_001102977] |
Percent Identity: | 77.92 % |
Parental protein coverage: | 67.57 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | SRTGRPIAFIRKIPWTAASSELREHFAQFGHVRRCTVPFDKE-TGFHRGMGWVQFSS-QEELQNALQEEH |
S..G.P.AFIRKIP..AASSELREHFAQ..H.RRCT.PFDKE..GFHRG.GWVQFSS.QEELQNALQ.EH | |
Retrocopy | SSIGWPTAFIRKIP*IAASSELREHFAQIDHGRRCTGPFDKE<AGFHRGSGWVQFSS<QEELQNALQQEH |
Parental | HIIDGVE |
HIIDG.. | |
Retrocopy | HIIDGIK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 5 .90 RPM |
SRP017611_kidney | 0 .00 RPM | 9 .91 RPM |
SRP017611_liver | 0 .00 RPM | 7 .53 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000003975 | 3 retrocopies | |
Bos taurus | ENSBTAG00000008135 | 3 retrocopies | |
Canis familiaris | ENSCAFG00000017230 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000016946 | 4 retrocopies | |
Cavia porcellus | ENSCPOG00000001500 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000007721 | 3 retrocopies | |
Echinops telfairi | ENSETEG00000010345 | 4 retrocopies | |
Felis catus | ENSFCAG00000024050 | 2 retrocopies | |
Homo sapiens | ENSG00000119705 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000011059 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000012080 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000029256 | 1 retrocopy | |
Mus musculus | ENSMUSG00000021040 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000006030 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000030691 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000012314 | 3 retrocopies |
retro_rnor_1670, retro_rnor_749 , retro_rnor_923,
|
Sus scrofa | ENSSSCG00000028167 | 5 retrocopies | |
Tupaia belangeri | ENSTBEG00000013979 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000001781 | 2 retrocopies |