RetrogeneDB ID:

retro_rnor_849

Retrocopy
location
Organism:Rat (Rattus norvegicus)
Coordinates:12:895274..895577(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:Hspb11
Ensembl ID:ENSRNOG00000010241
Aliases:None
Description:heat shock protein beta-11 [Source:RefSeq peptide;Acc:NP_001124474]


Retrocopy-Parental alignment summary:






>retro_rnor_849
ACCACAGGCACGGTTCCCAGGAGTTCCTTATTTGTTTCACAAACATGTCAAGATTGAAAATCTTGTGACCCAAAGTTACT
TAGTGCAGACCTTGAGGACTGAAAAGACCATGTGAAAAGAACCATTCGATTTTGAGCAGTGGGTTGAAAAATATCTAGAA
CTCGATGAAGAGGGGCGGCTTCAAACCCCTTCATGTTGTGGCATGAGATGGCCACTTCCTTGAGATTCACTCTTGTCTCA
GCCTTCAATCATCTTGCATCTGAACCTAGCATCCCTACAGAGGGACAAGCAGTCTCAAGTCTC

ORF - retro_rnor_849 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 63.55 %
Parental protein coverage: 71.33 %
Number of stop codons detected: 2
Number of frameshifts detected 4


Retrocopy - Parental Gene Alignment:

ParentalTTGMFP-QEFIIC-FHKHVKIEKLVIQSYLVRTLRIEKTTSKEPLDFEQWVEKDL-VHTEGQLQNE-EIM
TTG..P.QEF.IC.FHKHVKIE.LV.QSYLV.TLR.EKT..KEP.DFEQWVEK.L....EG.LQ......
RetrocopyTTGTVP<QEFLIC<FHKHVKIENLVTQSYLVQTLRTEKTM*KEPFDFEQWVEKYLELDEEGRLQTP>HVV
ParentalARDGYATFL-RFIIVSAFDHFASVHSISAEGLTVSSL
A.DG...FL.RF..VSAF.H.AS..SI..EG..VSSL
RetrocopyA*DGH--FL>RFTLVSAFNHLASEPSIPTEGQAVSSL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP017611_brain 0 .00 RPM 4 .39 RPM
SRP017611_kidney 0 .00 RPM 3 .56 RPM
SRP017611_liver 0 .00 RPM 1 .82 RPM
Rattus norvegicus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_rnor_849 retrocopy.
Rattus norvegicus was not studied using FANTOM5 data.
retro_rnor_849 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_rnor_849 has 0 orthologous retrocopies within eutheria group .


Parental genes homology:
Parental genes homology involve 4 parental genes, and 8 retrocopies.

Species Parental gene accession Retrocopies number
Dasypus novemcinctus ENSDNOG000000002843 retrocopies
Rattus norvegicus ENSRNOG00000010241 2 retrocopies
retro_rnor_849 , retro_rnor_850,
Ictidomys tridecemlineatus ENSSTOG000000026431 retrocopy
Tarsius syrichta ENSTSYG000000124992 retrocopies



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