RetrogeneDB ID: | retro_sara_135 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | GeneScaffold_4064:8363..8845(-) | ||
Located in intron of: | ENSSARG00000001331 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SERBP1 | ||
Ensembl ID: | ENSSARG00000000803 | ||
Aliases: | None | ||
Description: | SERPINE1 mRNA binding protein 1 [Source:HGNC Symbol;Acc:17860] |
Percent Identity: | 93.21 % |
Parental protein coverage: | 53.67 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | SDLDQSNVTEETPEGEEHPVA-DTENKENEVEEVKEEGPKEMTLDEWKAIQNKDRAKVEFNIRKPNEGAD |
.DLDQSNVTEETPEGEEHPV..DTEN.ENEVEEVKE.GPKEMTL.EWKA.QNKDRAKVE.NIRKPNEGAD | |
Retrocopy | TDLDQSNVTEETPEGEEHPVE<DTENTENEVEEVKE*GPKEMTLNEWKATQNKDRAKVELNIRKPNEGAD |
Parental | GQWKKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINFGDLGRPGRGGRGGRGGRGRGGRPNRGS |
GQWKKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINFGDLGRPGRGGRGGRGGR..GG.PNRGS | |
Retrocopy | GQWKKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINFGDLGRPGRGGRGGRGGRRHGGSPNRGS |
Parental | RTDKSNTSAPDVDDPEAFPALA |
RTDKSNTSAPDVDDPEAFPALA | |
Retrocopy | RTDKSNTSAPDVDDPEAFPALA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000017440 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000010396 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000001424 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000008946 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000001256 | 1 retrocopy | |
Sorex araneus | ENSSARG00000000803 | 1 retrocopy |
retro_sara_135 ,
|
Tupaia belangeri | ENSTBEG00000003689 | 4 retrocopies |