RetrogeneDB ID: | retro_sara_188 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | GeneScaffold_6401:45339..46353(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CSNK2A3 | ||
Ensembl ID: | ENSSARG00000002896 | ||
Aliases: | None | ||
Description: | casein kinase 2, alpha 3 polypeptide [Source:HGNC Symbol;Acc:2458] |
Percent Identity: | 75.81 % |
Parental protein coverage: | 85.82 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSGPVPSRARVYTDVNTHRPREYWDYESHVVEWGNQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKIL |
MS.PV.S..RVY.DVN.HRP.EYWDY.S.V...G.QDDYQL.RKLG.GKYS.VFEAI..T.N.KV.VKIL | |
Retrocopy | MSTPVESKSRVYADVNSHRPPEYWDYKSLVMQFGDQDDYQLIRKLGQGKYSNVFEAISSTSNKKVIVKIL |
Parental | KPVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQTLTDYDIRFYMYEI |
KPV...KIKREIKIL.NL.GGPNII.L...VKDP.S.TPALV.EHVNN.D.K..YQ.LTDYD.RFY.YEI | |
Retrocopy | KPVMELKIKREIKILQNLQGGPNIIKLVEAVKDPQSGTPALVLEHVNNGDHKRFYQ-LTDYDNRFYIYEI |
Parental | LKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYD |
LKALDY.HSMGIMHRDVKPHNV.IDH.H.KLRLIDWGLAEFYHPGQ.YN..V.S.YFKGPELLVDYQMYD | |
Retrocopy | LKALDYSHSMGIMHRDVKPHNVVIDHKHKKLRLIDWGLAEFYHPGQQYNAQVGSLYFKGPELLVDYQMYD |
Parental | YSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKR |
YSLD.WSLGCMLASMIFRK.PFFHG.D.YDQL.RIAKVLGT.DLYDYI.KYN..LDP.....LG.H.RK. | |
Retrocopy | YSLDIWSLGCMLASMIFRKVPFFHGSDDYDQLFRIAKVLGTDDLYDYIQKYNVDLDPCLSELLGSHPRKS |
Parental | WERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTVVKDQARMGSSSM |
WE.F....NQHL.S.EALD.LDKLLRYDHQSRLTAREAMEHPYF...VKDQ....SSS. | |
Retrocopy | WECFINKKNQHLISLEALDLLDKLLRYDHQSRLTAREAMEHPYFSDIVKDQTQRRSSSI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000014039 | 2 retrocopies | |
Homo sapiens | ENSG00000101266 | 1 retrocopy | |
Sorex araneus | ENSSARG00000002896 | 10 retrocopies |
retro_sara_188 , retro_sara_189, retro_sara_240, retro_sara_357, retro_sara_468, retro_sara_508, retro_sara_534, retro_sara_572, retro_sara_738, retro_sara_755,
|
Tursiops truncatus | ENSTTRG00000007064 | 1 retrocopy |