RetrogeneDB ID: | retro_sara_189 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | GeneScaffold_6401:82736..83861(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CSNK2A3 | ||
Ensembl ID: | ENSSARG00000002896 | ||
Aliases: | None | ||
Description: | casein kinase 2, alpha 3 polypeptide [Source:HGNC Symbol;Acc:2458] |
Percent Identity: | 78.51 % |
Parental protein coverage: | 95.44 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MSGPVPSRARVYTDVNTHRPREYWDYESHVVEWGNQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKIL |
M.GPV.SRARVY..VNT.RPREYWDYES.VVEWGNQDDYQL..KLG.GKYSEVFEAI...NNEKVVVK.L | |
Retrocopy | MLGPVQSRARVYANVNTQRPREYWDYESLVVEWGNQDDYQLMGKLGQGKYSEVFEAIKKSNNEKVVVKVL |
Parental | KPVKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQTLTDYDIRFYMYEI |
KPV..KKIKREIKIL.NL.GGPNIITL..IVKDP.S..PA.V.EHVN.TD..QLY..LTD.DIRFY.YEI | |
Retrocopy | KPVNEKKIKREIKILKNLQGGPNIITLVEIVKDPQSTNPAIVLEHVNSTDYNQLYP-LTDHDIRFYIYEI |
Parental | LKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYD |
LKALDY.HSMGIMHRDVKPHNVMIDH.HRKLRLIDWGLAEFYHPGQ.YNV.VASRYFK.PELL..YQMYD | |
Retrocopy | LKALDYSHSMGIMHRDVKPHNVMIDHKHRKLRLIDWGLAEFYHPGQQYNVQVASRYFKSPELLLNYQMYD |
Parental | YSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKR |
YSLDMWSLGCMLASMIF.KEPFFHG.DNYDQL.RIA.VLGT.DLYDYI.KY.I.LD...N.ILG.HSRK. | |
Retrocopy | YSLDMWSLGCMLASMIFLKEPFFHGVDNYDQLLRIARVLGTKDLYDYIRKYGIKLDRCLNVILGTHSRKT |
Parental | WERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTVVKDQARMGSSSMAGGSTPVSSAN |
WE.FV...NQHLV.PEAL..LDKLLRYDHQSRLTAREAMEHPYF.TVVK.QA..GSSS...G.TPV...N | |
Retrocopy | WECFVNKNNQHLVNPEALNLLDKLLRYDHQSRLTAREAMEHPYFSTVVKNQAQVGSSSKSEGCTPVNRTN |
Parental | MMSGISSVPTPSPLGPLAGSPVIAAAN |
.MSGIS.VP.P..L.PL.GS...AA.N | |
Retrocopy | -MSGIS*VPVPLSLRPLDGSSAVAASN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000014039 | 2 retrocopies | |
Homo sapiens | ENSG00000101266 | 1 retrocopy | |
Sorex araneus | ENSSARG00000002896 | 10 retrocopies |
retro_sara_188, retro_sara_189 , retro_sara_240, retro_sara_357, retro_sara_468, retro_sara_508, retro_sara_534, retro_sara_572, retro_sara_738, retro_sara_755,
|
Tursiops truncatus | ENSTTRG00000007064 | 1 retrocopy |