RetrogeneDB ID: | retro_sara_321 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_162298:4453..4926(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSSARG00000010806 | ||
Aliases: | None | ||
Description: | ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424] |
Percent Identity: | 72.33 % |
Parental protein coverage: | 66.95 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | FIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPH |
FIKIDGK..TD.TY.AGF.D.I.IDK.GENF.LI.DT.G.FAV..ITPE.AK..LCKVRKIFV.TKGIPH | |
Retrocopy | FIKIDGKMCTDMTYVAGFLDIICIDKMGENFWLIHDTEGHFAVPCITPERAKDELCKVRKIFVDTKGIPH |
Parental | LVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDT-GNLCMVTGGANLGRIGVITNRERHPGSFDV |
LV.H.A.TI..P.PL..VNDTIQID.ETGKI...I..D..GNLC.VTGGANLG.I.VITNR.RHPGS.DV | |
Retrocopy | LVKHKAPTIHCPGPLTVVNDTIQIDSETGKIKGLIQIDM<GNLCQVTGGANLGTIEVITNRQRHPGSLDV |
Parental | VHVKDANGNSFATRLSNIF |
VHVKD.N.NSFA..L.NIF | |
Retrocopy | VHVKDVNDNSFAACLPNIF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000014601 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000006337 | 3 retrocopies | |
Equus caballus | ENSECAG00000010852 | 6 retrocopies | |
Homo sapiens | ENSG00000129824 | 1 retrocopy | |
Meleagris gallopavo | ENSMGAG00000009671 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000011070 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000005294 | 11 retrocopies | |
Otolemur garnettii | ENSOGAG00000011808 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000022470 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000003201 | 1 retrocopy | |
Sorex araneus | ENSSARG00000010806 | 6 retrocopies |